View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12067_high_15 (Length: 299)

Name: NF12067_high_15
Description: NF12067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12067_high_15
NF12067_high_15
[»] chr3 (1 HSPs)
chr3 (1-299)||(2974116-2974412)


Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 2974116 - 2974412
Alignment:
Q  1 atgaattcttacaactctttcttccaaagaaagaaaacatactaggactgctaaaccaattaagaatggcaataattataagctgatctccagctttaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2974116 atgaattcttacaactctttcttccaaagaaagaaaacatactaggactgctaaaccaattaagaatggcaataattataagctgatctccagctttaac 2974215  T
Q  101 tgataactttttgagggccttttctattgcctttaaaccaacatctcttgatgcatcttggatcaccactactgtttgagcttctgtactcatctcccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  2974216 tgataactttttgagggccttttctattgcctttaaaccaacatctcttgatgcatcttggatcaccactactgtttgagcttctgtactca--tcccct 2974313  T
Q  201 ttcttagtttaaaaacttgctcttcaagtttctaacaaattattctttctcaaaagacaaaaagggtataaagagattttatgtgcagcttttcaatac 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| | |||||||||||    
T  2974314 ttcttagtttaaaaacttgctcttcaagtttctaacaaattattctttctcaaaagaaaaaaagggtttaaagagattttatgtgaaacttttcaatac 2974412  T

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