View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12067_high_8 (Length: 403)
Name: NF12067_high_8
Description: NF12067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12067_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 9 - 387
Target Start/End: Original strand, 2207232 - 2207610
Alignment:
| Q |
9 |
aatgagttttagttgtatggtcattcatgtgtggagtgggtttctagtcctaactggtaacttgttgatattagacaaaatataaaatagggttaaattg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2207232 |
aatgagttttagttgtatggtcattcatgtgtggagtgggtttctagtcctaactggtaacttgttgatattagacaaaatataaaatagggttaaattg |
2207331 |
T |
|
| Q |
109 |
tttttgtcatgaaatacgacctcagtacttcatgtctccactgatgggttatcgtttttcatcttgaaggagatcatcatatatgtcatttacgggatca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2207332 |
tttttgtcatgaaatacgacctcagtacttcatgtctccactgatgggttatcgtttttcatcttgaaggagatcatcatatatgtcatttacgggatca |
2207431 |
T |
|
| Q |
209 |
tcatatgcgtcacgaacatatgatgttgatgttgttgttgtcattgtatcagttaacaaggtagacctcaaaatttaaagtgcttacacaactagttact |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2207432 |
tcatatgcgtcacgaacatatgatgttgatgttgttgttgtcattgtatcagttaacaaggtagacctcaaaatttaaagtgcttacacaactagttact |
2207531 |
T |
|
| Q |
309 |
gtaaacacaccaaaaatatcatcacatcgacaaggatagttgaactcacaacctcattagtttatctaaatgtgatttg |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2207532 |
gtaaacacaccaaaaatatcatcacatcgacaaggatagttgaactcacaacctcattagtttatctaaatgtgatttg |
2207610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University