View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12067_low_10 (Length: 371)

Name: NF12067_low_10
Description: NF12067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12067_low_10
NF12067_low_10
[»] chr7 (15 HSPs)
chr7 (1-40)||(47612341-47612380)
chr7 (1-40)||(7999506-7999545)
chr7 (1-40)||(29559495-29559534)
chr7 (1-40)||(41088903-41088942)
chr7 (1-40)||(45025645-45025684)
chr7 (1-40)||(10674174-10674213)
chr7 (1-40)||(13860275-13860314)
chr7 (1-40)||(24164567-24164606)
chr7 (1-40)||(28248482-28248521)
chr7 (1-40)||(31903008-31903047)
chr7 (1-36)||(33901093-33901128)
chr7 (1-39)||(7456477-7456515)
chr7 (1-39)||(22618215-22618253)
chr7 (7-40)||(48948995-48949028)
chr7 (1-33)||(3633249-3633281)
[»] chr2 (6 HSPs)
chr2 (1-40)||(41464765-41464804)
chr2 (4-40)||(11724321-11724357)
chr2 (1-40)||(25795296-25795335)
chr2 (1-40)||(11687533-11687572)
chr2 (1-40)||(28143803-28143842)
chr2 (4-40)||(27311638-27311674)
[»] chr5 (5 HSPs)
chr5 (252-315)||(36934436-36934506)
chr5 (1-40)||(13932512-13932551)
chr5 (1-40)||(35318572-35318611)
chr5 (5-40)||(13128244-13128279)
chr5 (1-39)||(19211332-19211370)
[»] chr8 (10 HSPs)
chr8 (1-40)||(9633132-9633171)
chr8 (1-40)||(34745308-34745347)
chr8 (1-40)||(38298559-38298598)
chr8 (1-40)||(40645768-40645807)
chr8 (1-40)||(43292619-43292658)
chr8 (1-40)||(43409892-43409931)
chr8 (1-40)||(9420645-9420684)
chr8 (1-40)||(9550167-9550206)
chr8 (1-40)||(29690487-29690526)
chr8 (1-40)||(43932107-43932146)
[»] chr6 (6 HSPs)
chr6 (1-40)||(8265023-8265062)
chr6 (1-40)||(9343171-9343210)
chr6 (1-40)||(29284556-29284595)
chr6 (1-40)||(359603-359642)
chr6 (1-40)||(33127844-33127883)
chr6 (4-36)||(23916182-23916214)
[»] chr4 (14 HSPs)
chr4 (1-40)||(23558964-23559003)
chr4 (1-40)||(24100810-24100849)
chr4 (1-40)||(25756770-25756809)
chr4 (1-40)||(27587304-27587343)
chr4 (1-40)||(31853118-31853157)
chr4 (1-40)||(56491130-56491169)
chr4 (1-37)||(9813514-9813550)
chr4 (1-40)||(1205133-1205172)
chr4 (1-40)||(29686458-29686497)
chr4 (1-40)||(40592770-40592809)
chr4 (1-40)||(42160024-42160063)
chr4 (1-40)||(52136757-52136796)
chr4 (1-40)||(52966453-52966492)
chr4 (1-40)||(54673361-54673400)
[»] chr3 (13 HSPs)
chr3 (1-40)||(39616969-39617008)
chr3 (1-40)||(48643662-48643701)
chr3 (1-40)||(53703781-53703820)
chr3 (1-39)||(48346508-48346546)
chr3 (4-40)||(51980439-51980475)
chr3 (1-40)||(8764283-8764322)
chr3 (1-40)||(13356792-13356831)
chr3 (1-40)||(19227366-19227405)
chr3 (1-40)||(31376233-31376272)
chr3 (1-40)||(44118241-44118280)
chr3 (5-40)||(45746522-45746557)
chr3 (1-37)||(8769188-8769224)
chr3 (1-37)||(36191531-36191567)
[»] chr1 (5 HSPs)
chr1 (1-40)||(13321765-13321804)
chr1 (1-40)||(51590481-51590520)
chr1 (1-38)||(12175509-12175546)
chr1 (1-39)||(15699516-15699554)
chr1 (8-40)||(2543362-2543394)
[»] scaffold0767 (1 HSPs)
scaffold0767 (1-36)||(3864-3899)
[»] scaffold0200 (1 HSPs)
scaffold0200 (1-40)||(25672-25711)
[»] scaffold0023 (1 HSPs)
scaffold0023 (1-40)||(112881-112920)
[»] scaffold0059 (1 HSPs)
scaffold0059 (1-39)||(26644-26682)
[»] scaffold0004 (1 HSPs)
scaffold0004 (175-213)||(380823-380861)
[»] scaffold0287 (1 HSPs)
scaffold0287 (1-33)||(12804-12836)


Alignment Details
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 47612380 - 47612341
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  47612380 atgtatctagtctatatttataacgagatacattaattat 47612341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 7999506 - 7999545
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  7999506 atgtatctagtctatatttataacgagatgcattaattat 7999545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29559495 - 29559534
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  29559495 atgtatctagtctatatttataacgaaatacattaattat 29559534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 41088942 - 41088903
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  41088942 atgtatctagtctatatttataacgaaatacattaattat 41088903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 45025684 - 45025645
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  45025684 atgtatctagtctatatttataacaagatacattaattat 45025645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 10674213 - 10674174
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  10674213 atgtatctaatctatatttataacaagatacattaattat 10674174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 13860275 - 13860314
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  13860275 atgtatctagtctatatttataacaatatacattaattat 13860314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 24164606 - 24164567
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  24164606 atgtatctagtctatatttctaacaagatacattaattat 24164567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28248521 - 28248482
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  28248521 atgtatatagtctatatttataacgagatgcattaattat 28248482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 31903008 - 31903047
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  31903008 atgtatctagtctatatttatgacgaaatacattaattat 31903047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 33901128 - 33901093
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaa 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  33901128 atgtatctagtctatatttataacaagatacattaa 33901093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 7456477 - 7456515
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaatta 39  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  7456477 atgtatctagtctatatttacaacaagatacattaatta 7456515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 22618253 - 22618215
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaatta 39  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  22618253 atgtatctagtctatatttacaacaagatacattaatta 22618215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 48949028 - 48948995
Alignment:
Q  7 ctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||| |||||||||||||||    
T  48949028 ctagtctatatttataacaagatacattaattat 48948995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 3633249 - 3633281
Alignment:
Q  1 atgtatctagtctatatttataacgagatacat 33  Q
    |||||||||||||| ||||||||||||||||||    
T  3633249 atgtatctagtctacatttataacgagatacat 3633281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 41464804 - 41464765
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41464804 atgtatctagtctatatttataacgagatacattaattat 41464765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 11724357 - 11724321
Alignment:
Q  4 tatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||||||||||||||||    
T  11724357 tatctagtctatatttataacgagatacattaattat 11724321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 25795296 - 25795335
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  25795296 atgtatctagtctatatttataacgaaatacattaattat 25795335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 11687533 - 11687572
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  11687533 atgtatctagtctatatttataacgagttatattaattat 11687572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 28143803 - 28143842
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  28143803 atgtatctagtctatatttataataagatacattaattat 28143842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 27311638 - 27311674
Alignment:
Q  4 tatctagtctatatttataacgagatacattaattat 40  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  27311638 tatctagtctatatttataacaagatacgttaattat 27311674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 252 - 315
Target Start/End: Original strand, 36934436 - 36934506
Alignment:
Q  252 ttgtgacttcaacaatcattgattcaagatac-------aaccttcatcaacgatagagattataatatgc 315  Q
    |||| ||| |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  36934436 ttgtcactgcaacaatcattgattcaagatacaacatacaaccttcatcaacgatagagattataatatgc 36934506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 13932551 - 13932512
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  13932551 atgtatctagtctctatttataacgagatacattaattat 13932512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 35318572 - 35318611
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  35318572 atgtatctagtccatatttataacgagatacattaattat 35318611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 13128279 - 13128244
Alignment:
Q  5 atctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||||| |||||||||    
T  13128279 atctagtctatatttataacgagatatattaattat 13128244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 19211370 - 19211332
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaatta 39  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  19211370 atgtatctagtctatatttacaacaagatacattaatta 19211332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9633171 - 9633132
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  9633171 atgtatctagtctatatttataacaagatacattaattat 9633132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 34745347 - 34745308
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  34745347 atgtatctagtctatatttataacaagatacattaattat 34745308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 38298559 - 38298598
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  38298559 atgtatctagcctatatttataacgagatacattaattat 38298598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 40645768 - 40645807
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  40645768 atgtatctagtctatatttataacaagatacattaattat 40645807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 43292658 - 43292619
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  43292658 atgtatctagtctatatttataacaagatacattaattat 43292619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 43409892 - 43409931
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  43409892 atgtatctagtctatatttataacgaggtacattaattat 43409931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 9420645 - 9420684
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||| |||||||||||||||||| ||||||||||||    
T  9420645 atgtatctggtctatatttataacgaggtacattaattat 9420684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 9550167 - 9550206
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  9550167 atgtatctagtctatatttattacgagatacattagttat 9550206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29690526 - 29690487
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  29690526 atgtatctagtctatatttataataagatacattaattat 29690487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 43932107 - 43932146
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  43932107 atgtatctaatctatatttataacaagatacattaattat 43932146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 8265062 - 8265023
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  8265062 atgtatctagtctatatttataacaagatacattaattat 8265023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9343210 - 9343171
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  9343210 atgtatctagtctatatttataacaagatacattaattat 9343171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29284556 - 29284595
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  29284556 atgtatctagtctatatttataacgagatgcattaattat 29284595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 359603 - 359642
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  359603 atgtatctaatctatatttataacgagatacattagttat 359642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 33127844 - 33127883
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  33127844 atgtatctagtctatatttgtaacaagatacattaattat 33127883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 23916214 - 23916182
Alignment:
Q  4 tatctagtctatatttataacgagatacattaa 36  Q
    |||||| ||||||||||||||||||||||||||    
T  23916214 tatctaatctatatttataacgagatacattaa 23916182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 23558964 - 23559003
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  23558964 atgtatctagtctatatttataacgagatatattaattat 23559003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 24100849 - 24100810
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  24100849 atgtatctagtctatatttataacaagatacattaattat 24100810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 25756770 - 25756809
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  25756770 atgtatctagtctctatttataacgagatacattaattat 25756809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 27587304 - 27587343
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  27587304 atgtatctagtgtatatttataacgagatacattaattat 27587343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 31853157 - 31853118
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  31853157 atgtatctagtctatatttataacaagatacattaattat 31853118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 56491130 - 56491169
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  56491130 atgtatctagtctatatttataacgaggtacattaattat 56491169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9813514 - 9813550
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaat 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  9813514 atgtatctagtctatatttataacgagatgcattaat 9813550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1205172 - 1205133
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  1205172 atgtatctagtctatatttataataagatacattaattat 1205133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29686458 - 29686497
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  29686458 atgtatctagtctatatttataacaatatacattaattat 29686497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 40592770 - 40592809
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  40592770 atgtatctagtttatatttataacaagatacattaattat 40592809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 42160063 - 42160024
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  42160063 atgtatttagtctatatttataacaagatacattaattat 42160024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 52136757 - 52136796
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  52136757 atgtatttagtctatatttataacaagatacattaattat 52136796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 52966453 - 52966492
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  52966453 atgtatctagtctatatttataacaagatgcattaattat 52966492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 54673400 - 54673361
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    ||||||||||||||||||||||||||||| ||||| ||||    
T  54673400 atgtatctagtctatatttataacgagatgcattacttat 54673361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 39616969 - 39617008
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  39616969 atgtatctagtctatatttataacaagatacattaattat 39617008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 48643662 - 48643701
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  48643662 atgtatctagtctatatttataacgaaatacattaattat 48643701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 53703820 - 53703781
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  53703820 atgtatctagtctatatttataacaagatacattaattat 53703781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 48346508 - 48346546
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaatta 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  48346508 atgtatctagtctatatttataacaagatacattaatta 48346546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 51980475 - 51980439
Alignment:
Q  4 tatctagtctatatttataacgagatacattaattat 40  Q
    |||||||| ||||||||||||||||||||||||||||    
T  51980475 tatctagtttatatttataacgagatacattaattat 51980439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 8764322 - 8764283
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  8764322 atgtatctaatctatatttataacaagatacattaattat 8764283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 13356792 - 13356831
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  13356792 atgtatctagtctatatttataccgagatacattacttat 13356831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 19227366 - 19227405
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  19227366 atgtatctagtctatatttataacaagataaattaattat 19227405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 31376233 - 31376272
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  31376233 atgtatctagtctatatttataagaagatacattaattat 31376272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 44118241 - 44118280
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  44118241 atgtatctagtctatatttataacaatatacattaattat 44118280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 45746557 - 45746522
Alignment:
Q  5 atctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||||| |||||||||    
T  45746557 atctagtctatatttataacgagatatattaattat 45746522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8769224 - 8769188
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaat 37  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  8769224 atgtatctaatctatatttataacaagatacattaat 8769188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 36191567 - 36191531
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaat 37  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  36191567 atgtatctagtctatatatataacaagatacattaat 36191531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 13321804 - 13321765
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  13321804 atgtatctagtctatatttataacaagatacattaattat 13321765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 51590520 - 51590481
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  51590520 atgtatctagtctatatttataacaagatacattaattat 51590481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12175509 - 12175546
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaatt 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  12175509 atgtatctagtctatatttataacaagatacattaatt 12175546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 15699554 - 15699516
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaatta 39  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  15699554 atgtatctagtctatatttacaacaagatacattaatta 15699516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 2543394 - 2543362
Alignment:
Q  8 tagtctatatttataacgagatacattaattat 40  Q
    ||||||||||||||||||||||| |||||||||    
T  2543394 tagtctatatttataacgagataaattaattat 2543362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 3899 - 3864
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaa 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  3899 atgtatctagtctatatttataacgagatgcattaa 3864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 25672 - 25711
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  25672 atgtatctagtctatatttataataagatacattaattat 25711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 112881 - 112920
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaattat 40  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  112881 atgtatctaatctatatttataacaagatacattaattat 112920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 26644 - 26682
Alignment:
Q  1 atgtatctagtctatatttataacgagatacattaatta 39  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  26644 atgtatctagtctatatttacaacaagatacattaatta 26682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 380823 - 380861
Alignment:
Q  175 taataatttcttgaaatttgtctaatcaaatatttaaaa 213  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  380823 taataatttcttaaaatttgtgtaatcaaatatttaaaa 380861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 12836 - 12804
Alignment:
Q  1 atgtatctagtctatatttataacgagatacat 33  Q
    |||||||||||||| ||||||||||||||||||    
T  12836 atgtatctagtctacatttataacgagatacat 12804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University