View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12067_low_13 (Length: 355)
Name: NF12067_low_13
Description: NF12067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12067_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 26 - 337
Target Start/End: Original strand, 47717684 - 47717995
Alignment:
| Q |
26 |
atagacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaa |
125 |
Q |
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||||| ||||| ||||||||| ||||||||||||| |||| ||| |||| |||||||| | | ||||| ||||||||||| |||||| |||||||||| |
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| T |
47717684 |
atagatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctgaaatagcacgctctaaacaa |
47717783 |
T |
|
| Q |
126 |
tcattgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaagttgcattagcggtagcaaacttacgacgag |
225 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47717784 |
tcattgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaagttgcattagcggtagcaaacttacgacgag |
47717883 |
T |
|
| Q |
226 |
aatcacttgatgctgctatttctttgagtttcctcatcaagttcccaagaacttgattaaattgatccacctcggttgcatttttcaaggtccactttaa |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47717884 |
aatcacttgatgctgctatttctttgagtttcctcatcaagttcccaagaacttgattaaattgatccacctcggttgcatttttcaaggtccactttaa |
47717983 |
T |
|
| Q |
326 |
atatgaaggtga |
337 |
Q |
| |
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|||||||||||| |
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| T |
47717984 |
atatgaaggtga |
47717995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 47712866 - 47713171
Alignment:
| Q |
11 |
aggagcagagaagcgatagacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatata |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712866 |
aggatcagagaagcgatagacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatata |
47712965 |
T |
|
| Q |
111 |
gcaaactctaaacaatcattgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaa---------agttgcat |
201 |
Q |
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| T |
47712966 |
gcaaactctaaacaatcattgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcat |
47713065 |
T |
|
| Q |
202 |
tagcggtagcaaacttacgacgagaatcacttgatgctgctatttctttgagtttcctcatcaagttcccaagaacttgattaaattgatccacctcggt |
301 |
Q |
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|| | | |||||||||| ||||||||||||||||||| ||||||||| | ||||||||||||||||| ||||||||| |||||||| ||||||||||||| |
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| T |
47713066 |
tatccgcagcaaacttaagacgagaatcacttgatgcagctatttctctcagtttcctcatcaagtttccaagaactcgattaaatggatccacctcggt |
47713165 |
T |
|
| Q |
302 |
tgcatt |
307 |
Q |
| |
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| |||| |
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| T |
47713166 |
tacatt |
47713171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 32 - 308
Target Start/End: Original strand, 47745479 - 47745755
Alignment:
| Q |
32 |
ttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaatcattg |
131 |
Q |
| |
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|||||||||||||||||||||| |||||| |||||||| |||||||||||||||| | || ||||| ||||||| |||||| |||||||||||||||| |
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| T |
47745479 |
ttcatatctaatattacaacttagtttgagaactctaccaccaatcttgttataaaaaaaacttggagtttctgaaatagcacgctctaaacaatcattg |
47745578 |
T |
|
| Q |
132 |
caatcttgctctgacaaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaagttgcattagcggtagcaaacttacgacgagaatcac |
231 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47745579 |
caatcttgtcctgacaagtcaggtgtacactgcacaagaccatatatggtttcaaaattcaaagttgcattagcggtagcaaacttacgacgagaatcac |
47745678 |
T |
|
| Q |
232 |
ttgatgctgctatttctttgagtttcctcatcaagttcccaagaacttgattaaattgatccacctcggttgcattt |
308 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||| |
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| T |
47745679 |
ctgatgcagctatttcattgagtttcctcatcaagttcccaagaacttgattaaattgagccacatcggttacattt |
47745755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 32 - 307
Target Start/End: Original strand, 47759802 - 47760086
Alignment:
| Q |
32 |
ttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaatcattg |
131 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||| |||||||||||||| ||| || ||||||| ||||| |||||| |||||||||| |||| |
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| T |
47759802 |
ttcatatctgatattacaacttggtttgagaactctaccaccaatcttgttattacaacaacttggaatatctgagatagcaccatctaaacaattattg |
47759901 |
T |
|
| Q |
132 |
caatcttgctctgacaaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaa---------agttgcattagcggtagcaaacttacgac |
222 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||| |||||| ||||||||| |||||||||| | |||||||| ||||||| |
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| T |
47759902 |
caatcttgctctgacaaatcaggtgtgcactgaacaagaccatatatggtttgaaaattcaaatttacatcagttgcattatctgtagcaaatttacgac |
47760001 |
T |
|
| Q |
223 |
gagaatcacttgatgctgctatttctttgagtttcctcatcaagttcccaagaacttgattaaattgatccacctcggttgcatt |
307 |
Q |
| |
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|||||||||||||||| ||| | ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||| |
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| T |
47760002 |
gagaatcacttgatgcagctttctctttcagtttcctcatcaagttcccaagaacttggttaaattgatccacctctgttacatt |
47760086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 47704889 - 47704941
Alignment:
| Q |
32 |
ttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttat |
84 |
Q |
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||||||||||||||| ||||||||||||| |||||| | |||||||||||||| |
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| T |
47704889 |
ttcatatctaatattgcaacttggtttgataactcttccaccaatcttgttat |
47704941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 28830931 - 28830976
Alignment:
| Q |
32 |
ttcatatctaatattacaacttggtttgacaactctacaaccaatc |
77 |
Q |
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||||||||||||||||||||||||||| | ||||||| ||||||| |
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| T |
28830931 |
ttcatatctaatattacaacttggtttcataactctagcaccaatc |
28830976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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