View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12067_low_14 (Length: 313)
Name: NF12067_low_14
Description: NF12067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12067_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 21 - 302
Target Start/End: Complemental strand, 52457807 - 52457526
Alignment:
| Q |
21 |
gaatcctcatcaaatcacctaatctctaaaattaatttattttattaaaattaaattcctaatatggagtcaaggccaaatactctgttttctgagaccg |
120 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52457807 |
gaatccacatcaaattacctaatctctaaaattaatttattttattaaaattaaattcctaatatggagtcaaggccaaatactctgttttctgagaccg |
52457708 |
T |
|
| Q |
121 |
tgctcgttcctccgattgcatcatcctcttatgtttagcaatgaaatcatctaccgtgcgcttgaactcctctttactcaattcttcaacataacacaaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52457707 |
tgctcgttcctccgattgcatcatcctcttatgtttagcaatgaaatcatctaccgtgcgcttgaactcctctttactcaattcttcaacataacacaaa |
52457608 |
T |
|
| Q |
221 |
ctcctctgcggttcctttttcttcaaacatgtgtcgaatctcctcaactctctcgggttattcgccaccagactccgttcat |
302 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52457607 |
ctcctctgcggttccttcttcttcaaacatgtgtcgaatctcctcaactctctcgggttattcgccaccagactccgttcat |
52457526 |
T |
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