View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12067_low_18 (Length: 240)
Name: NF12067_low_18
Description: NF12067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12067_low_18 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 31402517 - 31402739
Alignment:
| Q |
18 |
cctcctggacctaggaaaatggttttgttgggtagagattggttgtgtagtgggatcaagcttgtcgttgttcgttgtgttcctccacgagttcttctcc |
117 |
Q |
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| T |
31402517 |
cctcctggacctaggaaaatggtttttttgggtagagattagttgtgtagtgggatcaagcttgtcgttgtttgttgtggtcctccacgagttcttctcc |
31402616 |
T |
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| Q |
118 |
actgaaggagggttgtgtatgtaacttcacatgcttggacgtttaagtcaatgcaggcttaagagagtgctgctaaaatatgataaatgtaatcttgggg |
217 |
Q |
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| T |
31402617 |
actgaaggagggttgtgtacgtaacttcacatgcttggacgtttaagtcaatgtgggcttaagagagtgcggctaaaatatgataaatgtaatcttgggg |
31402716 |
T |
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| Q |
218 |
tcaaccttctatttttggagacc |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
31402717 |
tcaaccttctatttttggagacc |
31402739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 1193359 - 1193575
Alignment:
| Q |
18 |
cctcctggacctaggaaaatggttttgttgggtagagattggttgtgtagtgggatcaagcttgtcgttgttcgttgtgttcctccacgagttcttctcc |
117 |
Q |
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| T |
1193359 |
cctcttggacctaggaaaatgggtctattgggttgagatatgttgtgttgtggaatcaagtttgtcgtcgtccgttgtggtccttcatgagtccttctct |
1193458 |
T |
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| Q |
118 |
actgaaggagggttgtgtatgtaacttcacatgcttggacgtttaagtcaatgcaggcttaagagagtgctgctaaaatatgataaatgtaatcttgggg |
217 |
Q |
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| T |
1193459 |
attgaaggagggtggtgtacgtaccttcacgtgctcggacgtttaagtgagtgagggcttaagagagtgctgctaaaatatgataaatgtaatcttgggg |
1193558 |
T |
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| Q |
218 |
tcaaccttctatttttg |
234 |
Q |
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| T |
1193559 |
gaaaccttctatttttg |
1193575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 9982722 - 9982497
Alignment:
| Q |
18 |
cctcctggacctaggaaaatggttttgttgggtagagattg---gttgtgtagtgggatcaagcttgtcgttgttcgttgtgttcctccacgagttcttc |
114 |
Q |
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|||||||||||||||||||||||| |||||||| ||||| ||||||||||||||| ||| |||||| || ||||||| |||| || |||| |||| |
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| T |
9982722 |
cctcctggacctaggaaaatggttatgttgggttgagatgatctgttgtgtagtgggattaagtctgtcgtcgtccgttgtggtccttcatgagtccttc |
9982623 |
T |
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| Q |
115 |
tccactgaaggagggttgtgtatgtaacttcacatgcttggacgtttaagtcaatgcaggcttaagagagtgctgctaaaatatgataaatgtaatcttg |
214 |
Q |
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| T |
9982622 |
tccactgaaggagggtggtgtacgtacctgcacatactcggatgtttaagtcagtgtgggcttaagagagtgctactaaaatatgataaatttaatcttg |
9982523 |
T |
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| Q |
215 |
gggtcaaccttctatttttggagacc |
240 |
Q |
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|| ||||||||||||||||||||| |
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| T |
9982522 |
ggtgaaaccttctatttttggagacc |
9982497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 1119293 - 1119411
Alignment:
| Q |
18 |
cctcctggacctaggaaaatggttttgttgggtagagattggttgtgtagtgggatcaagcttgtcgttgttcgttgtgttcctccacgagttcttctcc |
117 |
Q |
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| T |
1119293 |
cctcctggacctaggaaaatgggtctattgggttgagatatgttatgttttgggatcaaatttgtcgtcgtctgttgtggtccttcatgagtccttctct |
1119392 |
T |
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| Q |
118 |
actgaaggagggttgtgta |
136 |
Q |
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| T |
1119393 |
actgaaggagggtggtgta |
1119411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 14073382 - 14073269
Alignment:
| Q |
23 |
tggacctaggaaaatggttttgttgggtagagattggttgtgtagtgggatcaagcttgtcgttgttcgttgtgttcctccacgagttcttctccactga |
122 |
Q |
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| T |
14073382 |
tggacctaggaaaatagttttgttgggttgagatttgttgtgtagagggattgagctcgtcatcgttcgttgtggtgcttcataagtccttctccactta |
14073283 |
T |
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| Q |
123 |
aggagggttgtgta |
136 |
Q |
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| T |
14073282 |
aggatggtggtgta |
14073269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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