View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12067_low_21 (Length: 238)
Name: NF12067_low_21
Description: NF12067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12067_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 17442881 - 17443102
Alignment:
| Q |
1 |
tgacttgtaaagctgtttctaatgcttcctcttgtctcaaaagtcttctttgctcttgagcttgaagagcatttatatgctctgttaaggttatcttgga |
100 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
17442881 |
tgacttgtaaagctgtttctgatgcttcctcttgtctcaaaagtcttctctgctcttgagcttgaagagcatttataagctctgttaaggttatcttgga |
17442980 |
T |
|
| Q |
101 |
aagatcttttgattcttcaagtgcataaatctttgattcgaatctttcaggtaaaaccaccaagactttttctacaattctgctatcaagaaattgttct |
200 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17442981 |
aagatcttttgattcttcaagtgcagaaatctttgattcgaatctttcaggtaaaaccaccaagactttttctacaattctgctatcaagaaattgttct |
17443080 |
T |
|
| Q |
201 |
cccaacaatctgatttgattca |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
17443081 |
cccaacaatctgatttgattca |
17443102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3059319 - 3059098
Alignment:
| Q |
1 |
tgacttgtaaagctgtttctaatgcttcctcttgtctcaaaagtcttctttgctcttgagcttgaagagcatttatatgctctgttaaggttatcttgga |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3059319 |
tgacttgtaaagctgtttctgatgcttcctcttgtctcaaaagtcttctctgctcttgagcttgaagagcatttataagctctgttaaggttatcttgga |
3059220 |
T |
|
| Q |
101 |
aagatcttttgattcttcaagtgcataaatctttgattcgaatctttcaggtaaaaccaccaagactttttctacaattctgctatcaagaaattgttct |
200 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3059219 |
aagatcttttgattcttcaagtgcaaaaatctttgattcgaatctttcaggtaaaaccaccaagactttttctacaattctgctatcaagaaattgttct |
3059120 |
T |
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| Q |
201 |
cccaacaatctgatttgattca |
222 |
Q |
| |
|
||||||||||| |||||||||| |
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| T |
3059119 |
cccaacaatctaatttgattca |
3059098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4873962 - 4873741
Alignment:
| Q |
1 |
tgacttgtaaagctgtttctaatgcttcctcttgtctcaaaagtcttctttgctcttgagcttgaagagcatttatatgctctgttaaggttatcttgga |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
4873962 |
tgacttgtaaagctgtttctgatgcttcctcttgtctcaaaattcttctctgctcttgagcttgaagagcatttataagctctgttaaggttatcttgga |
4873863 |
T |
|
| Q |
101 |
aagatcttttgattcttcaagtgcataaatctttgattcgaatctttcaggtaaaaccaccaagactttttctacaattctgctatcaagaaattgttct |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4873862 |
aagatcttttgattcttcaagtgcagaaatctttgattcgaatctttcaggtaaaaccaccaagactttttctacaattctgctatcaagaaattgttct |
4873763 |
T |
|
| Q |
201 |
cccaacaatctgatttgattca |
222 |
Q |
| |
|
||||||||||| |||||||||| |
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|
| T |
4873762 |
cccaacaatcttatttgattca |
4873741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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