View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12067_low_22 (Length: 235)
Name: NF12067_low_22
Description: NF12067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12067_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 9452527 - 9452326
Alignment:
| Q |
17 |
gagagtcagagaacgatgattagcttttgttataaaccaactatcctatgagttaaagttgttaagtaaaaggacatgaattttataacttacacacctt |
116 |
Q |
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| T |
9452527 |
gagagtcagagaacgatgattagcttttgttataaaccaactatcctatgagttaaagttgttaagtaaaaggacatgaattttataacttacacacctt |
9452428 |
T |
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| Q |
117 |
agatattttctcatctattctcatgaatatgcacaatccttgattttatnnnnnnnttacacatcattattaaggaatagttaataatattacctgtttt |
216 |
Q |
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| T |
9452427 |
agata-tttctcatccattctcatgaatatgcacaatccttgattttataaaaaaattacacatcattattaaggaatatttaataatattacctgtttt |
9452329 |
T |
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| Q |
217 |
cgt |
219 |
Q |
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||| |
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| T |
9452328 |
cgt |
9452326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 9441278 - 9441169
Alignment:
| Q |
39 |
gcttttgttataaaccaactatcctatgagttaaagttgttaagt--aaaaggacatgaattttataacttacacaccttagatattttctcatctattc |
136 |
Q |
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|||||||| ||||||| |||||||||| |||| || ||||||||| |||||||||||||||||||| || | |||||| | ||| ||| ||||| ||| |
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| T |
9441278 |
gcttttgtcataaaccgactatcctataagtttaaattgttaagtaaaaaaggacatgaattttatatctgatacacctcatata-tttgtcatcctttc |
9441180 |
T |
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| Q |
137 |
tcatgaatatg |
147 |
Q |
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| T |
9441179 |
tcatgaatatg |
9441169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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