View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12067_low_5 (Length: 459)
Name: NF12067_low_5
Description: NF12067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12067_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 421
Target Start/End: Original strand, 45178718 - 45179120
Alignment:
| Q |
19 |
cacagatcttatttgatacaacctatgaagcactaatacttgcattatctttacctattgtattgaatacttgtctgatactgatactaatttgttaagt |
118 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45178718 |
cacagatcttatttgatagaacctattaagcactaatacttgcattatctttacctattgtattgaatacttgtttgatactgatactaatttgttaagt |
45178817 |
T |
|
| Q |
119 |
acctgcatcaatttcttttttctatctaaagtccatttcaacatacaaatctgatcaatgcctgaggcgatttgtacgcatgatatttttcatctccagg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45178818 |
acctgcatcaatttcttttttctatctaaagtccatttcaacatacaaatctgatcaatgcctgaggcgatttgtacgcatgatatttttcatctccagg |
45178917 |
T |
|
| Q |
219 |
tcgttgcatattagcttcaaaagtttgctgcatatttttcttctaattgctgcataattgtaattatctttagtttagttagatttttattccaaacgtt |
318 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45178918 |
tcgttgcatattagctttaaaaatttgctgcatatttttcttctaattgctgcataattgtaattatctttagtttagttagatttttattccaaacgtt |
45179017 |
T |
|
| Q |
319 |
aaacatgcaacagtaaattgcaattgtgtgtgtgcgcgcgcacgtgtttacacacactatgttttatgaatttataaatattatgtatcctatcttatat |
418 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45179018 |
aaacatgcaacagtaaattgcaattgtgtgtgtccgcgcgcacgtgtttacacacactatgttttatgaatttataaatattatgtatcctatcttatat |
45179117 |
T |
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| Q |
419 |
ttg |
421 |
Q |
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||| |
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| T |
45179118 |
ttg |
45179120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 327
Target Start/End: Original strand, 45172007 - 45172203
Alignment:
| Q |
136 |
ttttctatctaaagtccatttcaacatacaaatctgatcaatgcctgaggcgatttgtacgcatgatatttttcatctccaggtcgttgcatattagc-t |
234 |
Q |
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|||| |||| ||||||||||||||||||||| | || || ||||| || | |||| || |||||| |||| ||||| ||||||||| |||||||| | |
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| T |
45172007 |
ttttttatccaaagtccatttcaacatacaattttgttctctgcctaagactatttatatgcatga-cttttccatctacaggtcgttaaatattagctt |
45172105 |
T |
|
| Q |
235 |
tcaaaagtttgctgcatatttttcttct-----aattgctgcataattgtaattatctttagtttagttagatttttattccaaacgttaaacatgca |
327 |
Q |
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| |||| |||||||||||||||||||| |||| |||||||||||| |||||| |||||||| |||||||||||| ||| | ||||||||| |
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| T |
45172106 |
taaaaaaattgctgcatatttttcttcttttgcaattatggcataattgtaagtatcttcagtttagtgagatttttattctaaagttcaaacatgca |
45172203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 314
Target Start/End: Original strand, 45169233 - 45169351
Alignment:
| Q |
206 |
tttcatctccaggtcgttgcatattagcttcaaaagtttgctgcatatttttcttcta-----------attgctgcataattgtaattatctttagttt |
294 |
Q |
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|||||||| ||||||||||| ||||||||| |||| ||||||||||||||||| ||| |||||||| ||||||||||||| |||| ||| |
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| T |
45169233 |
tttcatcttcaggtcgttgcctattagcttaaaaa-tttgctgcatatttttcatctttcagaaatatgattgctgcgtaattgtaattatatttatttt |
45169331 |
T |
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| Q |
295 |
agttagatttttattccaaa |
314 |
Q |
| |
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||||||||||||| |||||| |
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| T |
45169332 |
agttagatttttactccaaa |
45169351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 45168922 - 45168980
Alignment:
| Q |
25 |
tcttatttgatacaacctatgaagcactaatacttgcattatctttacctattgtattg |
83 |
Q |
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||||||| || | ||||||||||||||||||| ||||||| |||| ||||||| ||||| |
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| T |
45168922 |
tcttattggacagaacctatgaagcactaatatttgcattgtcttcacctattctattg |
45168980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 24123768 - 24123723
Alignment:
| Q |
38 |
aacctatgaagcactaatacttgcattatctttacctattgtattg |
83 |
Q |
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||||||||||||||||||| ||||||| |||| ||||||||||||| |
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| T |
24123768 |
aacctatgaagcactaatatttgcattgtcttcacctattgtattg |
24123723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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