View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12067_low_7 (Length: 446)
Name: NF12067_low_7
Description: NF12067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12067_low_7 |
 | |
|
| [»] scaffold0421 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0421 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 432
Target Start/End: Complemental strand, 6322 - 5906
Alignment:
| Q |
15 |
aaggacataaatcaacagcatgagcatatcttcnnnnnnntaataagagatcacgttagagtaaacgattaaaattacttgttggaatgtaaaattcata |
114 |
Q |
| |
|
||||||||||||| ||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6322 |
aaggacataaatctacaacatgagc-tatcttcaaaaaaataataagagatcacgttagagtaaacgattaaaattacttgttggaatgtaaaattcata |
6224 |
T |
|
| Q |
115 |
tatagagatgaaagctagcgtgggtttctttgtgctcaataaaataattattattgtcttacaataatattacaatgatattaatttacaatcatataga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6223 |
tatagagatgaaagctagcgtgggtttctttgtgctcaataaaataattattattgtcttacaataatattacaatgatattaatttacaatcatataga |
6124 |
T |
|
| Q |
215 |
tcatgaaattttttactcaacatcttcatgtctctctttaacattgaacattctcatgtgaactattttctttatcttgatctctgagtctttcaagcct |
314 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6123 |
tcattaaattttttactcaacatcttcatgtctctctttaacattgaacattctcctgtgaactcttttctttatcttgatctctgagtctttcaagcct |
6024 |
T |
|
| Q |
315 |
ttccaaagtacaaatgatgaattgggacatgtatgttattgtacaatgcactacagcaatgacaccaatggcataaatattacctcttacaaaaattcaa |
414 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
6023 |
ttccaaagtccaaatgatgaattgggacatgtatgttattgtacaatgcactacaacaatgacaccaacggcataaatattacctcttacaaaaaaccaa |
5924 |
T |
|
| Q |
415 |
atcttttcttgcaaaaac |
432 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
5923 |
atcttttcttgcaaaaac |
5906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 13 - 432
Target Start/End: Original strand, 15929253 - 15929671
Alignment:
| Q |
13 |
agaaggacataaatcaacagcatgagcatatcttcnnnnnnntaataagagatcacgttagagtaaacgattaaaattacttgttggaatgtaaaattca |
112 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15929253 |
agaaggacataaatctacaacatgagc-tatcttcaaaaaaataataagagatcacgttagagtagacgattaaaattacttgttggaatgtaaaattca |
15929351 |
T |
|
| Q |
113 |
tatatagagatgaaagctagcgtgggtttctttgtgctcaataaaataattattattgtcttacaataatattacaatgatattaatttacaatcatata |
212 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15929352 |
tatctagagatgaaagctagcgtgggtttctttgtgctcaataaaataattattattgtcttacaataatattacaatgatattaatttacaatcatata |
15929451 |
T |
|
| Q |
213 |
gatcatgaaattttttactcaacatcttcatgtctctctttaacattgaacattctcatgtgaactattttctttatcttgatctctgagtctttcaagc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
15929452 |
gatcatgaaattttttactcaacatcttcatgtctctctttaacattgaacattctcctgtgaactcttttctttatcttgatctctgactctttcaagc |
15929551 |
T |
|
| Q |
313 |
ctttccaaagtacaaatgatgaattgggacatgtatgttattgtacaatgcactacagcaatgacaccaatggcataaatattacctcttacaaaaattc |
412 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| || | |
|
|
| T |
15929552 |
ctttccaaagtccaaatgatgaattgggacatgtatgttattgtacaatgcactacagcaataacaccaacggcataaatattacctcttacaaagatcc |
15929651 |
T |
|
| Q |
413 |
aaatcttttcttgcaaaaac |
432 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
15929652 |
aaatcttttcttgcaaaaac |
15929671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 134 - 349
Target Start/End: Complemental strand, 29150570 - 29150357
Alignment:
| Q |
134 |
gtgggtttctttgtgctcaataaaataattattattgtcttacaataatattacaatgatattaatttacaatcatatagatcatgaaattttttactca |
233 |
Q |
| |
|
||||| ||||| |||| ||||||||| | | | ||||||||||||||| |||||||||||| ||| |||||||||| | ||||||||| |||||| | |
|
|
| T |
29150570 |
gtgggattcttcatgcttaataaaatattgaatcttgtcttacaataatgttacaatgatataaatgtacaatcatacacatcatgaaaaactttactta |
29150471 |
T |
|
| Q |
234 |
acatcttcatgtctctctttaacattgaacattctcatgtgaactattttctttatcttgatctctgagtctttcaagcctttccaaagtacaaatgatg |
333 |
Q |
| |
|
||| |||||||||||||| |||||||| |||||| ||| | | |||||||||||||||| ||| | |||||||||||||||||||| |||| || |
|
|
| T |
29150470 |
acaatttcatgtctctcttgaacattga--attctcgtgtaattttttttctttatcttgatatcttggactttcaagcctttccaaagtccaaaatttg |
29150373 |
T |
|
| Q |
334 |
aattgggacatgtatg |
349 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
29150372 |
aattggtacatgtatg |
29150357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 134 - 356
Target Start/End: Complemental strand, 23893135 - 23892920
Alignment:
| Q |
134 |
gtgggtttctttgtgctcaataaaataattattattgtcttacaataatattacaatgatattaatttacaatcatatagatcatgaaattttttactca |
233 |
Q |
| |
|
||||||||||| ||||||||| |||| | | |||||||||||||||| |||| |||||| |||||||||||||||| ||||||||| |||||| | | |
|
|
| T |
23893135 |
gtgggtttcttcatgctcaatacaatacagaatcttgtcttacaataatactacattgatataaatttacaatcatatacatcatgaaaatttttaatga |
23893036 |
T |
|
| Q |
234 |
acatcttcatgtctctctttaacattgaacattctcatgtgaactattttctttatcttgatctctgagtctttcaagcctttccaaagtacaaatgatg |
333 |
Q |
| |
|
||| || ||||||||||| | |||| |||||||| ||| || |||||||||||| || | |||||||||||||||||||| |||| ||| |
|
|
| T |
23893035 |
gcatttttatgtctctcttgaccattttacattctcctgtaaatccttttctttatct--attgc----actttcaagcctttccaaagtccaaa-aatg |
23892943 |
T |
|
| Q |
334 |
aattgggacatgtatgttattgt |
356 |
Q |
| |
|
|||| ||||||||||| |||||| |
|
|
| T |
23892942 |
aattcggacatgtatgatattgt |
23892920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University