View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12067_low_9 (Length: 401)
Name: NF12067_low_9
Description: NF12067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12067_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 118 - 391
Target Start/End: Complemental strand, 2490060 - 2489787
Alignment:
| Q |
118 |
tgcacattctctaaacgccagcaatgtgaaatggccttgaagatccttatcatctgaactaactttttggagtgagatccaaatttatttaacacgacag |
217 |
Q |
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| T |
2490060 |
tgcacattctctaaacgccagcaatgtgaaatggccttgaagatccttatcatctgaactaactttttggagtgagatccaaatttatttaacacgacag |
2489961 |
T |
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| Q |
218 |
attggaaaatttctcttacttgtgctaaacaatctgagacatagtcatattgtacccaagagttgactttgcacataaaaaataatagtgttaattaaaa |
317 |
Q |
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| T |
2489960 |
attggaaaatttctcttacttgtactaaacaatctgagacatagtcatattgtacccaagagttgactttgcacataaaaaataatagtgttaattaaaa |
2489861 |
T |
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| Q |
318 |
aagaaatgtcactgtttgaccaattgatttaagttcaaaatttgtaacgtagggtgacacactcattgcctttg |
391 |
Q |
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| T |
2489860 |
aagaaatgtcactgtttgaccaattgatttaagttcaaaatttgtaacgtagggtgacacactcattgcttttg |
2489787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 2490216 - 2490128
Alignment:
| Q |
16 |
ttaaataggcttagaagtttaatctcaccttttaaagttaactcaaaggatgaggatgtccattttacaagcgcgcgcgcacacacaca |
104 |
Q |
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| T |
2490216 |
ttaaataggcttagaagtttaatctcaccttttaaagttaactctaaggatgaggatgtccattttacaagcgcgcgcgcgcacacaca |
2490128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 2493271 - 2493225
Alignment:
| Q |
221 |
ggaaaatttctcttacttgtgctaaacaatctgagacatagtcatat |
267 |
Q |
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| T |
2493271 |
ggaaaatttctcttacttgtactaaacaatctgaaagatagtcatat |
2493225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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