View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12068_low_1 (Length: 518)
Name: NF12068_low_1
Description: NF12068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12068_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 22 - 511
Target Start/End: Original strand, 35696117 - 35696606
Alignment:
| Q |
22 |
atgccatttttagctttccatcataaccaaatcatgttgtttatccccttagagagaaagaaagaatcatttccatttgtccaattcacaaggtggtggg |
121 |
Q |
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| T |
35696117 |
atgccatttttagctttccatcataaccaaatcatgttgtttatccccttagagagaaagaaagaatcatttccatttgtccaattcacaaggtggtggg |
35696216 |
T |
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| Q |
122 |
tgagtctcagccataacaccggctgctccccctccatcaatcaccccatagcattatcatttcaattttcacaacaaaatcaacctcatcacaacaatgt |
221 |
Q |
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| T |
35696217 |
tgagtctcagccataacaccggctgctccccctccatcaatcaccccatagcattatcatttcaattttcacaacaaaatcaacctcatcacaacaatgt |
35696316 |
T |
|
| Q |
222 |
cgatgctagcacctcccttccaactcctagaaatcaacgtcatatcagcacaagacctcgcacccgtttctaaatcaatcaaagcctatgcagttgcatg |
321 |
Q |
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| T |
35696317 |
cgatgctagcacctcccttccaactcctagaaatcaacgtcatatcagcacaagacctcgcacccgtttctaaatcaatcaaagcctatgcagttgcatg |
35696416 |
T |
|
| Q |
322 |
gctcaatccagaacgtaaacttaccacccaagcagaccctcatggtcataacaaccctacctggaatgaaaaatttgttttccgcgtcgacgatgatttc |
421 |
Q |
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| T |
35696417 |
gctcaatccagaacgtaaacttaccacccaagcagaccctcatggtcataacaaccctacctggaatgaaaaatttgttttccgcgtcgacgatgatttc |
35696516 |
T |
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| Q |
422 |
ctcctatcagaagagtctgtcattatgattgaaatctatgcctctgcttggctccgtgatgttctcattggaactgtcgctgttcatctc |
511 |
Q |
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| T |
35696517 |
ctcctatcagaagagtctgtcattatgattgaaatctatgcctctgcttggctccgtgatgttctcattggaactgtcgctgttcatctc |
35696606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 383 - 495
Target Start/End: Complemental strand, 47725572 - 47725460
Alignment:
| Q |
383 |
tggaatgaaaaatttgttttccgcgtcgacgatgatttcctcctatcagaagagtctgtcattatgattgaaatctatgcctctgcttggctccgtgatg |
482 |
Q |
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|||||||| |||||||||||||||||||| |||| || ||| |||||| ||||| || |||||||||||||| |||||||||||||||||| |
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| T |
47725572 |
tggaatgagaaatttgttttccgcgtcgataatgaatttctcaattcagaaagttctgttatcatgattgaaatctacaattctgcttggctccgtgata |
47725473 |
T |
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| Q |
483 |
ttctcattggaac |
495 |
Q |
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| T |
47725472 |
ttctcattggaac |
47725460 |
T |
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