View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12068_low_10 (Length: 238)
Name: NF12068_low_10
Description: NF12068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12068_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 4093268 - 4093441
Alignment:
| Q |
1 |
aggatgttcgacccataatatgtatactcaactcattcttctattgttatgaataaactttataaaaagag---------------------atatgccg |
79 |
Q |
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| T |
4093268 |
aggatgttcgacccataatatgtatactcaactcattcttctattgttatgaataaactttataaaaggaggaggttcctaagtaaaaggagatatgccg |
4093367 |
T |
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| Q |
80 |
ttcatacgacttaaacacaacgcatctgacttaaagcatggccgactgtttgccgaggtcacaaaagttccatc |
153 |
Q |
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| T |
4093368 |
ttcatacaacttaaacacaacgcatctgacttaaagcatggccgactatttgccgaggtcacaaaagttccatc |
4093441 |
T |
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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 4093490 - 4093562
Alignment:
| Q |
151 |
atctcaaaatcaaatattatttacattggaggtagttttttccaacattactccctccaaatcaaagagatat |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4093490 |
atctcaaaatcaaatattatttacattggaggtagttttttccaacattactccctccaaatcaaagagatat |
4093562 |
T |
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