View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12068_low_7 (Length: 273)
Name: NF12068_low_7
Description: NF12068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12068_low_7 |
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| [»] scaffold0312 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 42038694 - 42038455
Alignment:
| Q |
16 |
agcagagacattgagattagggactaatccagtagtgagattgagtttcatcacaatcacactataaattattccaattataagactagctattagtcct |
115 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42038694 |
agcagaaacattgagattagggactaatccagtagtgagattgagtttcatcacaatcacactataaattattccaattataagactagctattagtcct |
42038595 |
T |
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| Q |
116 |
ctaactgttatctgtttcctccatggtgctattctattcaactcttcatccatagccacttgaccctcttcaatgtgatgattctcaatctctctttctt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42038594 |
ctaactgttatctgtttcctccatggtgctattctattcaactcttcatccatagccacttgaccctcttcaatgtgatgattctcaatctctctttctt |
42038495 |
T |
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| Q |
216 |
cttcattgcttctagtatccattggattcacagattccac |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
42038494 |
cttcattgcttctagtatccattggattcacagattccac |
42038455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 441270 - 441393
Alignment:
| Q |
23 |
acattgagattagggactaatccagtagtgagattgagtttcatcacaatcacactataaattattccaattataagactagctattagtcctctaactg |
122 |
Q |
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|||||||||||||||||||| ||||| ||||| || || |||||||||||||||||||||||||| ||||| | || || |||||||||||||||| || |
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| T |
441270 |
acattgagattagggactaaaccagttgtgaggttcagcttcatcacaatcacactataaattatgccaataagaatgcttgctattagtcctctaattg |
441369 |
T |
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| Q |
123 |
ttatctgtttcctccatggtgcta |
146 |
Q |
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| T |
441370 |
tgatctgtttcatccatggtgcta |
441393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 151
Target Start/End: Original strand, 410718 - 410846
Alignment:
| Q |
23 |
acattgagattagggactaatccagtagtgagattgagtttcatcacaatcacactataaattattccaattataagactagctattagtcctctaactg |
122 |
Q |
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||||||||||||||||||| ||||| ||||| || || |||||||||||||||||||||| ||| ||||| | | || |||||||||||||||| || |
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| T |
410718 |
acattgagattagggactagaccagttgtgaggttcagcttcatcacaatcacactataaactatgccaataaggatgcttgctattagtcctctaattg |
410817 |
T |
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| Q |
123 |
ttatctgtttcctccatggtgctattcta |
151 |
Q |
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| T |
410818 |
tgatctgtttcatccatggtgctactcta |
410846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 428633 - 428759
Alignment:
| Q |
23 |
acattgagattagggactaatccagtagtgagattgagtttcatcacaatcacactataaattattccaattataagactagctattagtcctctaactg |
122 |
Q |
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|||||||||||||| |||| ||||| ||||| || || |||| ||||||||||||||| | ||| ||||| | | ||||| |||||||||||||| || |
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| T |
428633 |
acattgagattaggaactagaccagttgtgaggttcagcttcagcacaatcacactatacactataccaataaggatactagttattagtcctctaattg |
428732 |
T |
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| Q |
123 |
ttatctgtttcctccatggtgctattc |
149 |
Q |
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| T |
428733 |
tgaactgttttgtccatggtgctattc |
428759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 403630 - 403756
Alignment:
| Q |
23 |
acattgagattagggactaatccagtagtgagattgagtttcatcacaatcacactataaattattccaattataagactagctattagtcctctaactg |
122 |
Q |
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|||||||||||||| |||| ||||| ||||| || || |||| ||||||||||||||| | ||| ||||| | | |||| |||||||||||||| || |
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| T |
403630 |
acattgagattaggaactagaccagttgtgaggttcagcttcagcacaatcacactatacactataccaataaggatgctagttattagtcctctaattg |
403729 |
T |
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| Q |
123 |
ttatctgtttcctccatggtgctattc |
149 |
Q |
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| T |
403730 |
tgaactgttttgtccatggtgctattc |
403756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 19852 - 19724
Alignment:
| Q |
23 |
acattgagattagggactaatccagtagtgagattgagtttcatcacaatcacactataaattattccaattataagactagctattagtcctctaactg |
122 |
Q |
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||||||||||||||||||| ||||| ||||| || || |||||||||||||||||||||| ||| ||||| | | || |||||||||||||||| || |
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| T |
19852 |
acattgagattagggactagaccagttgtgaggttcagcttcatcacaatcacactataaactatgccaataaggatgcttgctattagtcctctaattg |
19753 |
T |
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| Q |
123 |
ttatctgtttcctccatggtgctattcta |
151 |
Q |
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| T |
19752 |
tgatctgtttcatccatggtgctactcta |
19724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 1917 - 1791
Alignment:
| Q |
23 |
acattgagattagggactaatccagtagtgagattgagtttcatcacaatcacactataaattattccaattataagactagctattagtcctctaactg |
122 |
Q |
| |
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|||||||||||||| |||| ||||| ||||| || || |||| ||||||||||||||| | ||| ||||| | | ||||| |||||||||||||| || |
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| T |
1917 |
acattgagattaggaactagaccagttgtgaggttcagcttcagcacaatcacactatacactataccaataaggatactagttattagtcctctaattg |
1818 |
T |
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| Q |
123 |
ttatctgtttcctccatggtgctattc |
149 |
Q |
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| | |||||| ||||||||||||||| |
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| T |
1817 |
tgaactgttttgtccatggtgctattc |
1791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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