View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12069_low_3 (Length: 251)

Name: NF12069_low_3
Description: NF12069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12069_low_3
NF12069_low_3
[»] chr5 (19 HSPs)
chr5 (1-170)||(27843413-27843582)
chr5 (1-173)||(32252065-32252237)
chr5 (88-157)||(16610601-16610670)
chr5 (89-157)||(26778716-26778784)
chr5 (82-157)||(27482668-27482743)
chr5 (54-148)||(8488049-8488143)
chr5 (82-146)||(25326150-25326214)
chr5 (109-189)||(29651764-29651844)
chr5 (78-154)||(29994641-29994717)
chr5 (113-160)||(8006832-8006879)
chr5 (54-173)||(19314984-19315103)
chr5 (63-153)||(18967861-18967951)
chr5 (57-158)||(804394-804495)
chr5 (53-154)||(21041947-21042048)
chr5 (109-157)||(31706422-31706470)
chr5 (89-148)||(14868215-14868274)
chr5 (113-174)||(704495-704556)
chr5 (84-148)||(12831519-12831583)
chr5 (84-148)||(12863494-12863558)
[»] chr1 (24 HSPs)
chr1 (1-183)||(23997058-23997239)
chr1 (84-157)||(26260780-26260853)
chr1 (108-173)||(52626559-52626624)
chr1 (89-147)||(9484879-9484937)
chr1 (97-163)||(40708435-40708501)
chr1 (89-154)||(28442145-28442210)
chr1 (89-153)||(44675129-44675193)
chr1 (54-173)||(6723692-6723811)
chr1 (84-147)||(27568412-27568475)
chr1 (54-148)||(42476314-42476408)
chr1 (53-154)||(48973649-48973750)
chr1 (84-155)||(5958325-5958396)
chr1 (114-157)||(36098617-36098660)
chr1 (54-145)||(45718332-45718423)
chr1 (113-155)||(8527077-8527119)
chr1 (54-148)||(52251340-52251434)
chr1 (84-173)||(15259429-15259518)
chr1 (53-138)||(31069643-31069728)
chr1 (89-157)||(38133036-38133104)
chr1 (89-154)||(5411773-5411838)
chr1 (53-154)||(22583190-22583291)
chr1 (46-151)||(28400486-28400591)
chr1 (113-157)||(17128543-17128587)
chr1 (109-157)||(32160123-32160171)
[»] chr4 (21 HSPs)
chr4 (18-173)||(12114958-12115113)
chr4 (54-148)||(9831383-9831477)
chr4 (59-173)||(13137084-13137198)
chr4 (84-172)||(52578013-52578101)
chr4 (1-173)||(13157377-13157549)
chr4 (89-151)||(27270009-27270071)
chr4 (3-148)||(10552586-10552731)
chr4 (89-154)||(11131187-11131252)
chr4 (110-157)||(19846583-19846630)
chr4 (54-148)||(8813999-8814093)
chr4 (89-147)||(30972395-30972453)
chr4 (113-162)||(13608940-13608989)
chr4 (53-154)||(54870818-54870919)
chr4 (84-172)||(22653316-22653404)
chr4 (110-157)||(37772967-37773014)
chr4 (54-144)||(8830949-8831039)
chr4 (89-151)||(21204901-21204963)
chr4 (58-144)||(40153935-40154021)
chr4 (84-157)||(20510422-20510495)
chr4 (55-144)||(42527352-42527441)
chr4 (89-153)||(25130442-25130506)
[»] scaffold0795 (1 HSPs)
scaffold0795 (55-188)||(2158-2290)
[»] chr3 (19 HSPs)
chr3 (1-173)||(45966953-45967125)
chr3 (1-173)||(37537209-37537381)
chr3 (110-173)||(22660126-22660189)
chr3 (84-172)||(14788896-14788984)
chr3 (118-173)||(25408827-25408882)
chr3 (160-236)||(27938764-27938848)
chr3 (89-154)||(29542387-29542452)
chr3 (89-154)||(41878726-41878791)
chr3 (54-154)||(19979278-19979378)
chr3 (54-148)||(21408135-21408229)
chr3 (89-154)||(6925985-6926050)
chr3 (89-154)||(22534037-22534102)
chr3 (46-151)||(42806292-42806397)
chr3 (53-154)||(53876881-53876982)
chr3 (109-157)||(4741053-4741101)
chr3 (57-145)||(47160990-47161078)
chr3 (54-173)||(23050114-23050233)
chr3 (112-154)||(6894250-6894292)
chr3 (89-157)||(20017419-20017487)
[»] chr7 (11 HSPs)
chr7 (1-173)||(25106740-25106913)
chr7 (89-142)||(26569741-26569794)
chr7 (54-173)||(35516691-35516810)
chr7 (84-157)||(17116400-17116473)
chr7 (110-157)||(47543481-47543528)
chr7 (113-162)||(9628257-9628306)
chr7 (53-154)||(12092674-12092775)
chr7 (57-154)||(38342966-38343063)
chr7 (89-133)||(49035422-49035466)
chr7 (115-174)||(34237214-34237273)
chr7 (54-148)||(10061951-10062045)
[»] chr2 (13 HSPs)
chr2 (89-157)||(45131123-45131191)
chr2 (57-173)||(38408989-38409105)
chr2 (84-157)||(27009227-27009300)
chr2 (109-157)||(8090522-8090570)
chr2 (53-173)||(36176623-36176742)
chr2 (84-154)||(31640268-31640338)
chr2 (54-154)||(40638803-40638903)
chr2 (54-169)||(21578652-21578767)
chr2 (57-148)||(36178866-36178957)
chr2 (3-147)||(841555-841699)
chr2 (110-189)||(20948163-20948242)
chr2 (92-157)||(30505752-30505817)
chr2 (54-147)||(44735982-44736075)
[»] chr8 (6 HSPs)
chr8 (54-157)||(8462510-8462613)
chr8 (89-148)||(33191209-33191268)
chr8 (84-173)||(4784718-4784808)
chr8 (84-157)||(33282844-33282917)
chr8 (84-148)||(37929136-37929200)
chr8 (89-154)||(7179030-7179095)
[»] chr6 (14 HSPs)
chr6 (84-157)||(11324496-11324569)
chr6 (60-154)||(11298592-11298686)
chr6 (15-148)||(32533070-32533203)
chr6 (110-157)||(22469477-22469524)
chr6 (84-157)||(2682791-2682864)
chr6 (89-153)||(17292767-17292831)
chr6 (54-154)||(29321324-29321424)
chr6 (110-157)||(32196814-32196861)
chr6 (119-148)||(10303167-10303196)
chr6 (82-151)||(12187517-12187586)
chr6 (84-157)||(34714944-34715017)
chr6 (113-157)||(14001801-14001845)
chr6 (54-154)||(18673363-18673463)
chr6 (89-145)||(29599177-29599233)


Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 27843413 - 27843582
Alignment:
Q  1 tatggaaagaaagaaacaacaaaatctttaattctatggaaagtcctattacacaggtggtggacaagatcaagtcattaacctttaggtggttgaaggt 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||    
T  27843413 tatggaaagaaagaaacaacagaatctttaattctatggaaagtcctattacacaagtggtggacgagatcaagtcagtaacctttaggtggttgaaggt 27843512  T
Q  101 gaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccatccttggtataggc 170  Q
    ||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||| |||||||    
T  27843513 gaaacttgtttctcttctcttcaattatcatggctggtaacttagtccatttaccatccttgatataggc 27843582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 32252065 - 32252237
Alignment:
Q  1 tatggaaagaaagaaacaacaaaatctttaattctatggaaagtcctattacacaggtggtggacaagatcaagtcattaacctttaggtggttgaaggt 100  Q
    ||||||||||||||||||||| ||| |||||| || |||||||| ||||  | || ||||||||||||||||||||| ||||||||||||||||||| |     
T  32252065 tatggaaagaaagaaacaacagaatttttaatactttggaaagttctatatctcatgtggtggacaagatcaagtcagtaacctttaggtggttgaacgc 32252164  T
Q  101 gaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccatccttggtataggctaa 173  Q
    |||||| | | ||||||| |||||||||||||| |||||||||||||| |||||||| || ||||||||||||    
T  32252165 gaaactcgctactcttcctttcaattatcatggttggtggcttagtccgtttaccattctcggtataggctaa 32252237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 16610601 - 16610670
Alignment:
Q  88 ggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    |||||||||||  |||  |||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  16610601 ggtggttgaagacgaagtttgtttctcttcccttcaattatcatgggtggtggcttagtccgtttaccat 16610670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 26778784 - 26778716
Alignment:
Q  89 gtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    |||||||||||||||| || |||||||| |||||||||||||||| |||||| ||||||| ||||||||    
T  26778784 gtggttgaaggtgaaatttttttctctttccttcaattatcatggttggtggtttagtccgtttaccat 26778716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 27482743 - 27482668
Alignment:
Q  82 cctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    ||||| |||||||||||||||||   ||| | ||||||||||||||||||||||||||||||||||| || |||||    
T  27482743 ccttttggtggttgaaggtgaaatacgttacacttcccttcaattatcatggctggtggcttagtccgttcaccat 27482668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 8488049 - 8488143
Alignment:
Q  54 caggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtcc 148  Q
    |||||||||||||| ||||||| | |||| |  ||||||||||||| |||||  || | ||||||| ||||||||||||| |||||||| |||||    
T  8488049 caggtggtggacaaaatcaagttactaacttacaggtggttgaaggagaaacacgtctgtcttcccctcaattatcatggttggtggctaagtcc 8488143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 25326150 - 25326214
Alignment:
Q  82 cctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagt 146  Q
    ||||||||||||||||||| ||| ||||| ||||| |||||||||| ||| | ||||||||||||    
T  25326150 cctttaggtggttgaaggtaaaatttgttactcttgccttcaattaccatcgttggtggcttagt 25326214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 189
Target Start/End: Complemental strand, 29651844 - 29651764
Alignment:
Q  109 tttctcttcccttcaattatcatggctggtggcttagtccatttaccatccttggtataggctaaatttttgttttctttt 189  Q
    ||||||||| | ||||||||||||| |||||||||||||| ||||||||  | || |||||||||  |||| |||||||||    
T  29651844 tttctcttctcctcaattatcatgggtggtggcttagtccgtttaccatgttgggcataggctaaggttttcttttctttt 29651764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 29994641 - 29994717
Alignment:
Q  78 ttaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttac 154  Q
    ||||| |||| |||||||||||||||  ||  || ||||||||||||||||||||| |||||||||| ||| |||||    
T  29994641 ttaacttttaagtggttgaaggtgaagtttccttttcttcccttcaattatcatggttggtggcttaatccgtttac 29994717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 8006832 - 8006879
Alignment:
Q  113 tcttcccttcaattatcatggctggtggcttagtccatttaccatcct 160  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |||||    
T  8006832 tcttcccttcaattatcatggttggtggctcagtccatttactatcct 8006879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 173
Target Start/End: Complemental strand, 19315103 - 19314984
Alignment:
Q  54 caggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccattta 153  Q
    |||||||| || ||||| |||||| | || |||| ||||||||||| |||| ||| ||   ||||||  ||||||||||| ||||||||||| || ||||    
T  19315103 caggtggttgataagattaagtcactcacatttatgtggttgaaggcgaaatttgctttatttccctggaattatcatggttggtggcttagcccgttta 19315004  T
Q  154 ccatccttggtataggctaa 173  Q
    |||| || || |||||||||    
T  19315003 ccatgctaggcataggctaa 19314984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 18967861 - 18967951
Alignment:
Q  63 gacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccattta 153  Q
    |||||||| |||||| |  | |||| ||||||||||| |||| ||| ||||||||| || ||| ||||||| || ||||||||||||||||    
T  18967861 gacaagattaagtcactttcttttatgtggttgaaggcgaaatttgcttctcttccatttaatgatcatggatgatggcttagtccattta 18967951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 158
Target Start/End: Complemental strand, 804495 - 804394
Alignment:
Q  57 gtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttacca 156  Q
    ||||| |||||||| ||||| ||||| || | ||||||||||| ||||  |||| |||| ||||  || || |||||||||||||| ||||| |||||||    
T  804495 gtggtagacaagataaagtccttaactttcatgtggttgaaggagaaatgtgttactctcccctctaactaccatggctggtggctaagtccgtttacca 804396  T
Q  157 tc 158  Q
    ||    
T  804395 tc 804394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 21041947 - 21042048
Alignment:
Q  53 acaggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccattt 152  Q
    ||||||||||||||| || ||||  || || || | ||||||  |||||||  ||||  |||||||||| ||||||||||| |||||||||||||| |||    
T  21041947 acaggtggtggacaaaattaagttgttgactttcaagtggttataggtgaagtttgtaactcttccctttaattatcatgggtggtggcttagtccgttt 21042046  T
Q  153 ac 154  Q
    ||    
T  21042047 ac 21042048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 31706470 - 31706422
Alignment:
Q  109 tttctcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    ||||||||||| ||||||| ||||| |||||||||||||| ||||||||    
T  31706470 tttctcttcccctcaattaccatgggtggtggcttagtccgtttaccat 31706422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 148
Target Start/End: Complemental strand, 14868274 - 14868215
Alignment:
Q  89 gtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtcc 148  Q
    |||||||||||  ||| |||||  | || |||||||||||||||||||||||||||||||    
T  14868274 gtggttgaaggcaaaatttgttcatttttccttcaattatcatggctggtggcttagtcc 14868215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 704556 - 704495
Alignment:
Q  113 tcttcccttcaattatcatggctggtggcttagtccatttaccatccttggtataggctaaa 174  Q
    |||||| |||||||||||||| ||||| |||||||| |||||||| || || || |||||||    
T  704556 tcttccattcaattatcatgggtggtgacttagtccgtttaccatactgggcattggctaaa 704495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 12831583 - 12831519
Alignment:
Q  84 tttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtcc 148  Q
    |||| |||||||||||||||| ||    | ||||||||||||| |||||| ||||||||||||||    
T  12831583 tttatgtggttgaaggtgaaatttaacacgcttcccttcaattttcatggttggtggcttagtcc 12831519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 12863558 - 12863494
Alignment:
Q  84 tttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtcc 148  Q
    |||| |||||||||||||||| ||    | ||||||||||||| |||||| ||||||||||||||    
T  12863558 tttatgtggttgaaggtgaaatttaacacgcttcccttcaattttcatggttggtggcttagtcc 12863494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 23997058 - 23997239
Alignment:
Q  1 tatggaaagaaagaaacaacaaaatctttaattctatggaaagtcctattacacaggtggtggacaagatcaagtcattaacctttaggtggttgaaggt 100  Q
    ||||||||||||||||||| | ||||||||||||||| |||||| |||||  |||||||||||||||||| |||||| | ||||||||||||||||||||    
T  23997058 tatggaaagaaagaaacaatagaatctttaattctattgaaagttctattttacaggtggtggacaagattaagtcagttacctttaggtggttgaaggt 23997157  T
Q  101 gaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccatccttggtataggctaaatttttgttt 183  Q
    |||||| ||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||| |||||||| |||||||||||    
T  23997158 gaaactcgtttctctttcctttaattatcatggctgatggcttagtccttttaccatccttgatataggct-aatttttgttt 23997239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 26260780 - 26260853
Alignment:
Q  84 tttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    |||| ||||||||||| |||  ||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  26260780 tttacgtggttgaaggcgaagtttgcttctcttcccttcaattatcatgggtggtggcttagtccatttaccat 26260853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 52626559 - 52626624
Alignment:
Q  108 gtttctcttcccttcaattatcatggctggtggcttagtccatttaccatccttggtataggctaa 173  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||  |  |||||||||||    
T  52626559 gtttctcttcccttcaattatcatggttggtggcttagtccatttaccatattgcgtataggctaa 52626624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 9484879 - 9484937
Alignment:
Q  89 gtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtc 147  Q
    ||||||||||| |||| |||||||||||||||||||||||||||| |||||| ||||||    
T  9484879 gtggttgaaggcgaaatttgtttctcttcccttcaattatcatggttggtggtttagtc 9484937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 40708501 - 40708435
Alignment:
Q  97 aggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccatccttgg 163  Q
    ||||||||  ||||||||||||||||||||||||||   ||||||||||||| ||||||||||||||    
T  40708501 aggtgaaatatgtttctcttcccttcaattatcatgttcggtggcttagtccgtttaccatccttgg 40708435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 28442210 - 28442145
Alignment:
Q  89 gtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttac 154  Q
    |||||||||||||||  |||| ||||||||||| || |||||||| ||||||||||||||||||||    
T  28442210 gtggttgaaggtgaagtttgtctctcttccctttaactatcatggttggtggcttagtccatttac 28442145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 44675129 - 44675193
Alignment:
Q  89 gtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccattta 153  Q
    ||||||||||| |||| ||| ||| |||||||||||||||||||| |||||||||||||| ||||    
T  44675129 gtggttgaaggcgaaatttgcttcccttcccttcaattatcatggttggtggcttagtccgttta 44675193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 173
Target Start/End: Complemental strand, 6723811 - 6723692
Alignment:
Q  54 caggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccattta 153  Q
    |||||||| |||||||| |||||  | || |||| |||||||||||||||  ||  | ||| ||| ||||||| |||||| |||||||||||||| || |    
T  6723811 caggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcctcctttcaattttcatggatggtggcttagtccgttca 6723712  T
Q  154 ccatccttggtataggctaa 173  Q
    |||| ||||| |||||||||    
T  6723711 ccatgcttggaataggctaa 6723692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 27568412 - 27568475
Alignment:
Q  84 tttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtc 147  Q
    |||| |||||||||||  ||| |||||||||||||||||||||| ||||| |||||||||||||    
T  27568412 tttacgtggttgaaggcaaaatttgtttctcttcccttcaattaccatgggtggtggcttagtc 27568475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 42476314 - 42476408
Alignment:
Q  54 caggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtcc 148  Q
    |||||||||||||| ||||||||| |||| |  ||||||||||||| |||||  ||   ||||||| ||||||||||||| |||||||| |||||    
T  42476314 caggtggtggacaaaatcaagtcactaacttacaggtggttgaaggggaaacacgtcagtcttcccctcaattatcatggttggtggctaagtcc 42476408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 48973649 - 48973750
Alignment:
Q  53 acaggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccattt 152  Q
    ||||||||||||||| || ||||  || || || | |||||| ||||||||  ||||  |||||||||| ||||||||||| |||||||||||||| |||    
T  48973649 acaggtggtggacaaaattaagttgttgactttcaagtggttaaaggtgaagtttgtaactcttccctttaattatcatgggtggtggcttagtccgttt 48973748  T
Q  153 ac 154  Q
    ||    
T  48973749 ac 48973750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 155
Target Start/End: Complemental strand, 5958396 - 5958325
Alignment:
Q  84 tttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttacc 155  Q
    ||||||||||||||||||||| ||| | || ||||||| || |||||||| |||||||||| | ||||||||    
T  5958396 tttaggtggttgaaggtgaaatttgctacttttccctttaactatcatggatggtggcttaattcatttacc 5958325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 157
Target Start/End: Complemental strand, 36098660 - 36098617
Alignment:
Q  114 cttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    ||||||||||||||||||||||||||||||||||| || |||||    
T  36098660 cttcccttcaattatcatggctggtggcttagtccgttcaccat 36098617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 145
Target Start/End: Original strand, 45718332 - 45718423
Alignment:
Q  54 caggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttag 145  Q
    ||||||||||||||||| ||||  ||||| || | |||| ||||| ||||| |||   |||||||||| ||||||||||| |||||||||||    
T  45718332 caggtggtggacaagattaagttgttaactttgaagtggctgaagatgaaatttgccactcttccctttaattatcatggttggtggcttag 45718423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 8527077 - 8527119
Alignment:
Q  113 tcttcccttcaattatcatggctggtggcttagtccatttacc 155  Q
    ||||||||||||||||||||| ||||| |||||||||||||||    
T  8527077 tcttcccttcaattatcatggttggtgacttagtccatttacc 8527119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 52251340 - 52251434
Alignment:
Q  54 caggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtcc 148  Q
    |||||||||||||| ||||||||| | || ||||  |||||||||| ||||| ||    ||||||| |||| |||||||| ||||||||||||||    
T  52251340 caggtggtggacaaaatcaagtcactgacttttacatggttgaaggggaaacatgacagtcttcccctcaactatcatggttggtggcttagtcc 52251434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 173
Target Start/End: Original strand, 15259429 - 15259518
Alignment:
Q  84 tttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccatccttggtataggctaa 173  Q
    |||| ||||||||||| |||   | ||||||||||| ||||||| ||||| |||| ||||||||| |||||||| || || |||||||||    
T  15259429 tttacgtggttgaaggcgaagtatatttctcttcccctcaattaccatgggtggtagcttagtccgtttaccatactgggcataggctaa 15259518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 31069643 - 31069728
Alignment:
Q  53 acaggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggt 138  Q
    ||||||||| |||||||| ||||||||  |||| | ||||||||||| |||| |||  |||||||| || ||||||||||| ||||    
T  31069643 acaggtggtagacaagattaagtcattttccttcatgtggttgaaggcgaaatttgcctctcttccattaaattatcatggatggt 31069728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 38133104 - 38133036
Alignment:
Q  89 gtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    ||||||||||| || | |||||| |||||||||||| ||  |||| |||||||||||||||||| ||||    
T  38133104 gtggttgaaggcgagatttgtttttcttcccttcaactacaatggatggtggcttagtccatttgccat 38133036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 5411773 - 5411838
Alignment:
Q  89 gtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttac 154  Q
    |||||||||||||||  ||||  |||||||||| || |||||||| || ||||||||||| |||||    
T  5411773 gtggttgaaggtgaagtttgtaactcttccctttaactatcatggttgttggcttagtccgtttac 5411838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 22583291 - 22583190
Alignment:
Q  53 acaggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccattt 152  Q
    ||||||||| || ||||| |||||| |  |||| | ||||||||||| |||| |||  ||||||||||| || ||  || | ||||||||||||||||||    
T  22583291 acaggtggtagataagatgaagtcactttccttcatgtggttgaaggcgaaatttgcctctcttcccttaaactagtatagatggtggcttagtccattt 22583192  T
Q  153 ac 154  Q
    ||    
T  22583191 ac 22583190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 151
Target Start/End: Original strand, 28400486 - 28400591
Alignment:
Q  46 ctattacacaggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttag 145  Q
    |||||| |||||||||||| | ||| ||||  ||||| ||   |||| ||||||||||  ||||  ||||||| || || |||||||| |||||||||||    
T  28400486 ctattaaacaggtggtggataggattaagttgttaactttccagtggatgaaggtgaagtttgtcactcttccttttaactatcatgggtggtggcttag 28400585  T
Q  146 tccatt 151  Q
    ||||||    
T  28400586 tccatt 28400591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 17128543 - 17128587
Alignment:
Q  113 tcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    ||||||||||||||| ||| | |||||||||||||| ||||||||    
T  17128543 tcttcccttcaattaccattgttggtggcttagtccttttaccat 17128587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 32160123 - 32160171
Alignment:
Q  109 tttctcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    |||||||| |||||||||| ||| | |||||||||||||| ||||||||    
T  32160123 tttctctttccttcaattaccattggtggtggcttagtccgtttaccat 32160171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 12114958 - 12115113
Alignment:
Q  18 aacaaaatctttaattctatggaaagtcctattacacaggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttc 117  Q
    ||||||||||||||| ||||||||||| ||||| |  ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||  |||||    
T  12114958 aacaaaatctttaatactatggaaagttctatttcttaggtggtggacaagatcaagtcagtaacctttaggtggttgaaggtgaaactcgttattcttc 12115057  T
Q  118 ccttcaattatcatggctggtggcttagtccatttaccatccttggtataggctaa 173  Q
    |||||||||||||||| | |||||| ||||| ||||||||||| ||||||||||||    
T  12115058 ccttcaattatcatggtttgtggctcagtccgtttaccatcctcggtataggctaa 12115113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 9831383 - 9831477
Alignment:
Q  54 caggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtcc 148  Q
    ||||||||||| |||||||||||  |  | |||||||||||||||| |||| | ||| | |||||||||||||||||||||||||||||||||||    
T  9831383 caggtggtggataagatcaagtctcttgcttttaggtggttgaaggcgaaattcgttacacttcccttcaattatcatggctggtggcttagtcc 9831477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 59 - 173
Target Start/End: Original strand, 13137084 - 13137198
Alignment:
Q  59 ggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccatc 158  Q
    |||||||||||| ||||| ||||| |  |||||||||||||||||| ||| | |||||  ||||||||||||||| |||||||||||||| |||||| |     
T  13137084 ggtggacaagattaagtcgttaacttacaggtggttgaaggtgaaatttgctactcttttcttcaattatcatggttggtggcttagtccgtttacctta 13137183  T
Q  159 cttggtataggctaa 173  Q
    || || |||||||||    
T  13137184 ctaggcataggctaa 13137198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 52578013 - 52578101
Alignment:
Q  84 tttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccatccttggtataggcta 172  Q
    |||| |||||||||||||||  |||| ||||||||||||||||||||||| |||||||||||| | ||| |||| || || ||||||||    
T  52578013 tttacgtggttgaaggtgaagtttgtatctcttcccttcaattatcatggttggtggcttagtgcgtttgccattctaggcataggcta 52578101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 13157377 - 13157549
Alignment:
Q  1 tatggaaagaaagaaacaacaaaatctttaattctatggaaagtcctattacacaggtggtggacaagatcaagtcattaacctttaggtggttgaaggt 100  Q
    |||||||||||||||||||||| || |||||| | |  |||||  | ||||  |||||||||||||| || ||||||||||| |  |||||||||| ||     
T  13157377 tatggaaagaaagaaacaacaagatttttaatgcaaaagaaagctcaattatgcaggtggtggacaaaatgaagtcattaacttacaggtggttgaggga 13157476  T
Q  101 gaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccatccttggtataggctaa 173  Q
    |||| |  ||  |||||| ||||| |||||||| | ||||||| |||| |||||| | || || |||||||||    
T  13157477 gaaattctttaatcttcctttcaactatcatggatagtggctttgtccgtttaccgtactaggcataggctaa 13157549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 27270071 - 27270009
Alignment:
Q  89 gtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatt 151  Q
    ||||||||||| |||| ||  ||| |||||||||||||||||||| |||||||||||||||||    
T  27270071 gtggttgaaggcgaaatttccttcacttcccttcaattatcatggttggtggcttagtccatt 27270009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 10552586 - 10552731
Alignment:
Q  3 tggaaagaaagaaacaacaaaatctttaattctatggaaagtcctattacacaggtggtggacaagatcaagtcattaacctttaggtggttgaaggtga 102  Q
    ||||| ||||| |||| || ||| |||||||||| ||| ||  ||||||  ||||||||||| | ||| ||||  ||||| || | ||||||||||||||    
T  10552586 tggaaggaaaggaacaccataatttttaattctaaggatagctctattatgcaggtggtggataggattaagttgttaacattcaagtggttgaaggtga 10552685  T
Q  103 aacttgtttctcttcccttcaattatcatggctggtggcttagtcc 148  Q
    |   || | |||||||||| || |||||||| ||||||||||||||    
T  10552686 agtatgctactcttccctttaactatcatggttggtggcttagtcc 10552731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 11131252 - 11131187
Alignment:
Q  89 gtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttac 154  Q
    |||||||||||||||  ||||  |||||||||| ||||||||||| |||||||||||||| |||||    
T  11131252 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttac 11131187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 19846583 - 19846630
Alignment:
Q  110 ttctcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||||||    
T  19846583 ttctcttcccttcaattatcatgggtggtggattagtccgtttaccat 19846630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 8813999 - 8814093
Alignment:
Q  54 caggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtcc 148  Q
    |||||||||||||| ||||| ||||| || |||| ||||||||| | ||||  || |  ||||||| ||||||| ||||| ||||||||||||||    
T  8813999 caggtggtggacaaaatcaaatcattgacttttacgtggttgaaagggaaatatgctagtcttcccctcaattaccatggttggtggcttagtcc 8814093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 30972453 - 30972395
Alignment:
Q  89 gtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtc 147  Q
    |||| |||||| |||| ||  ||||||||||||||| ||||||||||||||||||||||    
T  30972453 gtggctgaaggcgaaatttccttctcttcccttcaactatcatggctggtggcttagtc 30972395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 13608989 - 13608940
Alignment:
Q  113 tcttcccttcaattatcatggctggtggcttagtccatttaccatccttg 162  Q
    ||||||||||||||| ||||| |||||||||||||| |||||||| ||||    
T  13608989 tcttcccttcaattaccatggttggtggcttagtccgtttaccatacttg 13608940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 54870919 - 54870818
Alignment:
Q  53 acaggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccattt 152  Q
    |||||||||||||||||| || |  || || || | |||||| || |||||  ||||  |||||||||| ||||||||||| |||||||||||||| |||    
T  54870919 acaggtggtggacaagattaaattgttgactttcaagtggttaaatgtgaagtttgtaactcttccctttaattatcatggttggtggcttagtccgttt 54870820  T
Q  153 ac 154  Q
    ||    
T  54870819 ac 54870818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 22653316 - 22653404
Alignment:
Q  84 tttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccatccttggtataggcta 172  Q
    |||| ||||||||||| |||| ||| ||   || |||||||||||||||| |||||||||||||  |||||||| ||  ||||||||||    
T  22653316 tttatgtggttgaaggcgaaatttgcttacattaccttcaattatcatggttggtggcttagtctgtttaccatgctgagtataggcta 22653404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 37772967 - 37773014
Alignment:
Q  110 ttctcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    |||||||||||||||||| ||||| |||||||||||||| || |||||    
T  37772967 ttctcttcccttcaattaccatggttggtggcttagtcctttcaccat 37773014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 8831039 - 8830949
Alignment:
Q  54 caggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggctta 144  Q
    |||||||| ||||| || |||||  | || |||| || |||||||| |||| || ||| ||||||||||||||| |||| |||||||||||    
T  8831039 caggtggttgacaaaattaagtcgctcacttttatgtagttgaaggagaaatttctttatcttcccttcaattaccatgactggtggctta 8830949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 21204963 - 21204901
Alignment:
Q  89 gtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatt 151  Q
    ||||||||| | |||| ||  ||| |||||||||||||||||||| |||||||||||| ||||    
T  21204963 gtggttgaatgcgaaattttcttcacttcccttcaattatcatggttggtggcttagttcatt 21204901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 144
Target Start/End: Complemental strand, 40154021 - 40153935
Alignment:
Q  58 tggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggctta 144  Q
    ||||||||||||| |||||  |||| |  |||||||||||||||||| ||| |  ||||||||| || |||||| | ||||||||||    
T  40154021 tggtggacaagattaagtcggtaacttacaggtggttgaaggtgaaatttgctaatcttccctttaactatcatagttggtggctta 40153935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 20510422 - 20510495
Alignment:
Q  84 tttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    |||| |||||||||||||||| ||    | ||||||||||||| |||||| |||||||||||||| || |||||    
T  20510422 tttatgtggttgaaggtgaaatttaacacgcttcccttcaattttcatggttggtggcttagtccgttcaccat 20510495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 42527441 - 42527352
Alignment:
Q  55 aggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggctta 144  Q
    |||||| ||||| ||| ||||  |||||||  | |||||||||||||||| ||  | ||||||| | |||||||||||| ||||||||||    
T  42527441 aggtggcggacatgattaagttgttaacctacaagtggttgaaggtgaaattttctactcttccttccaattatcatggttggtggctta 42527352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 25130506 - 25130442
Alignment:
Q  89 gtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccattta 153  Q
    ||||||||||| |||| ||| | ||||| || |||| |||||||| |||||||||||||| ||||    
T  25130506 gtggttgaaggagaaatttgctactctttccctcaactatcatggttggtggcttagtccgttta 25130442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 55 - 188
Target Start/End: Original strand, 2158 - 2290
Alignment:
Q  55 aggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttac 154  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||| || | |||||| ||||||||||||||||| |||||||| |||||||||||    
T  2158 aggtggtggacaagatcaagtcggtaacctttaggtggttgaaggtgaagctcgcttctctccccttcaattatcatggttggtggctcagtccatttac 2257  T
Q  155 catccttggtataggctaaatttttgttttcttt 188  Q
    |||||| |||||||||| |||||||| |||||||    
T  2258 catcctcggtataggct-aatttttggtttcttt 2290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 45967125 - 45966953
Alignment:
Q  1 tatggaaagaaagaaacaacaaaatctttaattctatggaaagtcctattacacaggtggtggacaagatcaagtcattaacctttaggtggttgaaggt 100  Q
    ||||||||||||||||| ||||||| |||||| || |||| ||| ||||| | ||||||||||||||||| ||| |  ||||||||||||||||||||||    
T  45967125 tatggaaagaaagaaacgacaaaatttttaatgctttggatagttctatttctcaggtggtggacaagattaaggcggtaacctttaggtggttgaaggt 45967026  T
Q  101 gaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccatccttggtataggctaa 173  Q
    ||   | | ||||||||| ||||| |||||||| |||||||| | ||| |||||||| |||||||||||||||    
T  45967025 gaggatcgcttctcttcctttcaactatcatggttggtggctaaatccgtttaccattcttggtataggctaa 45966953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 37537381 - 37537209
Alignment:
Q  1 tatggaaagaaagaaacaacaaaatctttaattctatggaaagtcctattacacaggtggtggacaagatcaagtcattaacctttaggtggttgaaggt 100  Q
    ||||||||||||||||||||| ||| |||||| ||||  ||||||| ||  | ||||||||||||||||| |||    ||||||||||||||||||||||    
T  37537381 tatggaaagaaagaaacaacagaatgtttaatactataaaaagtcccatctcccaggtggtggacaagattaaggttgtaacctttaggtggttgaaggt 37537282  T
Q  101 gaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccatccttggtataggctaa 173  Q
    |||  | | |||||||||||| | ||||||||| ||||||||||  || ||| |||| || ||||||||||||    
T  37537281 gaagttcgcttctcttccctttacttatcatggttggtggcttaacccgttttccatactcggtataggctaa 37537209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 22660189 - 22660126
Alignment:
Q  110 ttctcttcccttcaattatcatggctggtggcttagtccatttaccatccttggtataggctaa 173  Q
    ||||||||| |||||||||||||| |||||||| | |||||||||||| |||||||||||||||    
T  22660189 ttctcttcctttcaattatcatggttggtggctcaatccatttaccattcttggtataggctaa 22660126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 14788896 - 14788984
Alignment:
Q  84 tttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccatccttggtataggcta 172  Q
    |||| ||||||||||| |||| ||||||||||||||| |||||| ||||  |||||||||||||  ||| |||| || |||||||||||    
T  14788896 tttacgtggttgaaggcgaaatttgtttctcttccctccaattaccatgagtggtggcttagtcagtttgccattctgggtataggcta 14788984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 25408827 - 25408882
Alignment:
Q  118 ccttcaattatcatggctggtggcttagtccatttaccatccttggtataggctaa 173  Q
    |||||||||||||||| |||||||||||||||||||||||  | ||||||||||||    
T  25408827 ccttcaattatcatggttggtggcttagtccatttaccatgttgggtataggctaa 25408882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 27938764 - 27938848
Alignment:
Q  160 ttggtataggctaaatttttgttttcttt--------tctattgggcacttggtgatgccttgtaagtattactgacactactgt 236  Q
    |||||||||||||||||||||||||||||        ||| |||||||||| |||| |||||||||||| |||||||||||||||    
T  27938764 ttggtataggctaaatttttgttttctttcctttgtttcttttgggcacttcgtgacgccttgtaagtactactgacactactgt 27938848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 29542452 - 29542387
Alignment:
Q  89 gtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttac 154  Q
    |||||||||||||||  ||||  |||||||||| || |||||||| ||||||||||||||||||||    
T  29542452 gtggttgaaggtgaagtttgtcactcttccctttaactatcatggttggtggcttagtccatttac 29542387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 41878726 - 41878791
Alignment:
Q  89 gtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttac 154  Q
    |||||||||||||||  ||||  |||||||||| || |||||||| ||||||||||||||||||||    
T  41878726 gtggttgaaggtgaagtttgtcactcttccctttaactatcatggttggtggcttagtccatttac 41878791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 154
Target Start/End: Complemental strand, 19979378 - 19979278
Alignment:
Q  54 caggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccattta 153  Q
    ||||||||||||| ||| |||   ||||| || | |||||||||||||||  ||||  |||||||||| || |||||||| ||||||||||| |||||||    
T  19979378 caggtggtggacatgattaagctgttaactttcaagtggttgaaggtgaagtttgtaactcttccctttaactatcatggttggtggcttagcccattta 19979279  T
Q  154 c 154  Q
    |    
T  19979278 c 19979278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 21408229 - 21408135
Alignment:
Q  54 caggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtcc 148  Q
    |||||||||||||| ||||| ||| | || |||| ||||||||| | ||||| || |  ||||||| ||||||| ||||| ||||||||||||||    
T  21408229 caggtggtggacaaaatcaaatcactgacttttacgtggttgaaagggaaacatgctagtcttcccctcaattaccatggttggtggcttagtcc 21408135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 6925985 - 6926050
Alignment:
Q  89 gtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttac 154  Q
    |||||| ||||||||  ||||  |||||||||| ||||||||||| |||||||||||||| |||||    
T  6925985 gtggttaaaggtgaagtttgtaactcttccctttaattatcatgggtggtggcttagtccgtttac 6926050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 22534037 - 22534102
Alignment:
Q  89 gtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttac 154  Q
    |||||||||||||||  ||||  ||||||| || || |||||||| ||||||||||||||||||||    
T  22534037 gtggttgaaggtgaagtttgtcactcttccttttaactatcatgggtggtggcttagtccatttac 22534102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 151
Target Start/End: Complemental strand, 42806397 - 42806292
Alignment:
Q  46 ctattacacaggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttag 145  Q
    |||||| |||||||||||| | ||| ||||  ||||| ||   |||||||||||||||  ||||  ||||||| || || |||||||| |||||||||||    
T  42806397 ctattaaacaggtggtggataggattaagttgttaactttcctgtggttgaaggtgaagtttgtcactcttccttttaactatcatgggtggtggcttag 42806298  T
Q  146 tccatt 151  Q
    ||||||    
T  42806297 tccatt 42806292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 53876982 - 53876881
Alignment:
Q  53 acaggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccattt 152  Q
    ||||||||||||||| || ||||  || || || | |||||| ||||||||  ||||  |||||||||| ||||||||||| ||||||||| |||| |||    
T  53876982 acaggtggtggacaaaattaagttgttgactttcaagtggttaaaggtgaagtttgtaactcttccctttaattatcatgggtggtggcttggtccgttt 53876883  T
Q  153 ac 154  Q
    ||    
T  53876882 ac 53876881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 4741053 - 4741101
Alignment:
Q  109 tttctcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    ||||||||||||||||||| ||||| || ||||||||||| ||||||||    
T  4741053 tttctcttcccttcaattaccatgggtgatggcttagtccgtttaccat 4741101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 145
Target Start/End: Original strand, 47160990 - 47161078
Alignment:
Q  57 gtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttag 145  Q
    |||||||| | ||| ||||  ||||| |||| |||||||||||||||  ||  ||||||||| |||||||| ||||| |||||||||||    
T  47160990 gtggtggataggattaagttgttaacttttaagtggttgaaggtgaagtttccttctcttccattcaattaccatggttggtggcttag 47161078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 173
Target Start/End: Original strand, 23050114 - 23050233
Alignment:
Q  54 caggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccattta 153  Q
    ||||| ||||||||||| |||||||  || || | ||||||||||| |||||  | |  ||||||||| || |  ||||| |||||||||||||||||||    
T  23050114 caggtagtggacaagattaagtcatcgactttcacgtggttgaaggggaaacacgctagtcttcccttaaactcccatggttggtggcttagtccattta 23050213  T
Q  154 ccatccttggtataggctaa 173  Q
    | ||||| || || ||||||    
T  23050214 ctatcctaggcattggctaa 23050233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 6894250 - 6894292
Alignment:
Q  112 ctcttcccttcaattatcatggctggtggcttagtccatttac 154  Q
    |||||||||||||||||||||| |||||| ||||||| |||||    
T  6894250 ctcttcccttcaattatcatggttggtggattagtccgtttac 6894292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 20017487 - 20017419
Alignment:
Q  89 gtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    ||||||||||  |||| ||||||| |||||||| || || ||||||||||||||| |||| || |||||    
T  20017487 gtggttgaagaagaaatttgtttcacttcccttaaactaccatggctggtggctttgtccgttcaccat 20017419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 25106913 - 25106740
Alignment:
Q  1 tatggaaagaaagaaacaacaaaatctttaattctat-ggaaagtcctattacacaggtggtggacaagatcaagtcattaacctttaggtggttgaagg 99  Q
    |||||||||||| |||||| | ||| |||||| || | ||| | | ||||| | ||||||||||||||||| ||| |  |||||||||||||||||||||    
T  25106913 tatggaaagaaaaaaacaatagaatttttaatgcttttggataattctatttctcaggtggtggacaagattaaggcggtaacctttaggtggttgaagg 25106814  T
Q  100 tgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccatccttggtataggctaa 173  Q
    |||   | | |||| |||| ||||| |||||||||| |||||| | ||| |||||||| ||||||||| |||||    
T  25106813 tgaggatcgcttctattcctttcaactatcatggcttgtggctcaatccgtttaccattcttggtatatgctaa 25106740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 26569741 - 26569794
Alignment:
Q  89 gtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggct 142  Q
    ||||||||||| |||||||| |||||||||||||||||||||||| ||||||||    
T  26569741 gtggttgaaggcgaaacttgcttctcttcccttcaattatcatggatggtggct 26569794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 173
Target Start/End: Original strand, 35516691 - 35516810
Alignment:
Q  54 caggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccattta 153  Q
    ||||||| | ||||||| |||||||  ||||| | ||||||||||| |||||  |||  ||||||||| |||| | |||| |||||||||||||||||||    
T  35516691 caggtggcgaacaagattaagtcatcgaccttcacgtggttgaaggggaaacacgttagtcttcccttaaatttttatggttggtggcttagtccattta 35516790  T
Q  154 ccatccttggtataggctaa 173  Q
    | ||||| || || ||||||    
T  35516791 ctatcctaggcattggctaa 35516810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 17116473 - 17116400
Alignment:
Q  84 tttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    |||| ||||||||||| ||||  || |||||||||||||| ||||||||| |||||||||||||  ||||||||    
T  17116473 tttatgtggttgaaggcgaaatatgcttctcttcccttcagttatcatggttggtggcttagtctgtttaccat 17116400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 47543481 - 47543528
Alignment:
Q  110 ttctcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    |||||||||||||||||||||||| || ||||||||||| ||||||||    
T  47543481 ttctcttcccttcaattatcatgggtgatggcttagtccgtttaccat 47543528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 9628257 - 9628306
Alignment:
Q  113 tcttcccttcaattatcatggctggtggcttagtccatttaccatccttg 162  Q
    ||||||||||||||| ||||| |||||||||||||| |||||||| ||||    
T  9628257 tcttcccttcaattaccatggttggtggcttagtccgtttaccatacttg 9628306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 12092674 - 12092775
Alignment:
Q  53 acaggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccattt 152  Q
    ||||||||| || ||||| |||||| |  |||| | ||||||||||| |||| ||   ||||||||||| || |||||||| | ||||||||||||||||    
T  12092674 acaggtggtagataagattaagtcactttccttcatgtggttgaaggcgaaattttcctctcttcccttaaactatcatggatagtggcttagtccattt 12092773  T
Q  153 ac 154  Q
    ||    
T  12092774 ac 12092775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 154
Target Start/End: Original strand, 38342966 - 38343063
Alignment:
Q  57 gtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttac 154  Q
    |||||||||| ||| ||||  ||||| || | ||||||||||||||| |||||  |||||||||| || |||||||| ||||| |||| ||| |||||    
T  38342966 gtggtggacaggattaagttgttaactttcaagtggttgaaggtgaagcttgtaactcttccctttaactatcatggttggtgacttaatccgtttac 38343063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 49035466 - 49035422
Alignment:
Q  89 gtggttgaaggtgaaacttgtttctcttcccttcaattatcatgg 133  Q
    ||||||||||| |||| ||| ||||||||||||||||||||||||    
T  49035466 gtggttgaaggcgaaagttgcttctcttcccttcaattatcatgg 49035422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 34237214 - 34237273
Alignment:
Q  115 ttcccttcaattatcatggctggtggcttagtccatttaccatccttggtataggctaaa 174  Q
    ||||||||||||||||||| |||||||||||||| || |||||  | || ||||||||||    
T  34237214 ttcccttcaattatcatggttggtggcttagtcctttcaccatgttgggcataggctaaa 34237273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 10062045 - 10061951
Alignment:
Q  54 caggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtcc 148  Q
    ||||||| |||||| ||||||||| |||| |  ||||||||||||| |||||  ||   |||||||||| ||||||||| || |||||| |||||    
T  10062045 caggtggcggacaaaatcaagtcactaacttacaggtggttgaaggggaaacacgtcagtcttcccttcgattatcatgacttgtggctaagtcc 10061951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 45131191 - 45131123
Alignment:
Q  89 gtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    ||||||||||| ||||  || |||||||||||||||||||||||| |||||||||||||||||||||||    
T  45131191 gtggttgaaggggaaatatgcttctcttcccttcaattatcatgggtggtggcttagtccatttaccat 45131123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 173
Target Start/End: Original strand, 38408989 - 38409105
Alignment:
Q  57 gtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttacca 156  Q
    |||||||||||||| ||||| ||||| |  | || ||||||||||||| | | | | |||||||||||||||||||| |||||| | ||||| |||||||    
T  38408989 gtggtggacaagattaagtcgttaacttacatgtagttgaaggtgaaattcgctacacttcccttcaattatcatggttggtggttcagtccgtttacca 38409088  T
Q  157 tccttggtataggctaa 173  Q
    | || ||||||||||||    
T  38409089 ttctaggtataggctaa 38409105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 27009227 - 27009300
Alignment:
Q  84 tttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    |||||||| ||||||| |||| ||  |||||||||||||||||| ||||| |||||||||||||| ||||||||    
T  27009227 tttaggtgattgaaggcgaaatttacttctcttcccttcaattaccatggttggtggcttagtccgtttaccat 27009300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 8090522 - 8090570
Alignment:
Q  109 tttctcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  8090522 tttctcttcccttcaattatcatgggtggtggcttagtccgtttaccat 8090570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 173
Target Start/End: Complemental strand, 36176742 - 36176623
Alignment:
Q  53 acaggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccattt 152  Q
    ||||||||| || ||||| |||||  | || |||| |||||| | ||||||| ||| |||||||| ||||||||||||||| |||||  |||||||||||    
T  36176742 acaggtggttgataagattaagtcgctcacatttatgtggtt-atggtgaaatttgcttctcttctcttcaattatcatggttggtgttttagtccattt 36176644  T
Q  153 accatccttggtataggctaa 173  Q
    |||||  | ||||||||||||    
T  36176643 accatgttgggtataggctaa 36176623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 31640268 - 31640338
Alignment:
Q  84 tttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttac 154  Q
    |||| ||||||||||| |||| ||| |||||||||| ||||||| ||||| |||||||||||||| |||||    
T  31640268 tttacgtggttgaaggcgaaatttgcttctcttcccctcaattaccatggatggtggcttagtccgtttac 31640338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 154
Target Start/End: Complemental strand, 40638903 - 40638803
Alignment:
Q  54 caggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccattta 153  Q
    |||||||| |||||||| || ||  | ||||||| |||||||| | ||||   || |||||||||||||||||| ||||| |||||||||||||| ||||    
T  40638903 caggtggtcgacaagattaaatcgcttacctttacgtggttgatgttgaagtatgcttctcttcccttcaattaccatgggtggtggcttagtccgttta 40638804  T
Q  154 c 154  Q
    |    
T  40638803 c 40638803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 169
Target Start/End: Complemental strand, 21578767 - 21578652
Alignment:
Q  54 caggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccattta 153  Q
    ||||||||||||||||| ||| |  || | ||||||||| |||||||||     | ||||||| ||||||| |||||||| |||||||| | ||| ||||    
T  21578767 caggtggtggacaagattaaggcggtatcttttaggtgggtgaaggtgaggaacgcttctctttccttcaactatcatggatggtggctcaatccgttta 21578668  T
Q  154 ccatccttggtatagg 169  Q
    |||| |||||||||||    
T  21578667 ccattcttggtatagg 21578652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 148
Target Start/End: Original strand, 36178866 - 36178957
Alignment:
Q  57 gtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtcc 148  Q
    ||||||||||| ||||||||  ||||||| | ||||||||||| ||||| |||   ||||||| ||||||| ||||| |||||||| |||||    
T  36178866 gtggtggacaaaatcaagtctctaaccttcatgtggttgaaggggaaacatgtcagtcttcccctcaattaccatggttggtggctaagtcc 36178957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 147
Target Start/End: Complemental strand, 841699 - 841555
Alignment:
Q  3 tggaaagaaagaaacaacaaaatctttaattctatggaaagtcctattacacaggtggtggacaagatcaagtcattaacctttaggtggttgaaggtga 102  Q
    ||||| ||||| ||||||||| | ||||||| || ||| ||  ||||||  ||||||||||| | ||| ||||  ||||  || | ||||||||||||||    
T  841699 tggaaggaaaggaacaacaaattttttaattataaggatagctctattatgcaggtggtggataggattaagttgttaatattcaagtggttgaaggtga 841600  T
Q  103 aacttgtttctcttcccttcaattatcatggctggtggcttagtc 147  Q
    |   || | |||||||||| || |||||||| |||||||||||||    
T  841599 agtatgctactcttccctttaactatcatggttggtggcttagtc 841555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 20948163 - 20948242
Alignment:
Q  110 ttctcttcccttcaattatcatggctggtggcttagtccatttaccatccttggtataggctaaatttttgttttctttt 189  Q
    |||||||| | ||||||| ||||| |||||||||||||| ||||||||  | ||| ||||||||  |||| |||||||||    
T  20948163 ttctcttcgcctcaattaccatgggtggtggcttagtccgtttaccatgttgggtgtaggctaaggttttcttttctttt 20948242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 30505752 - 30505817
Alignment:
Q  92 gttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    |||||||| |||| ||  ||| |||||||||||||||||||| |||||| ||||||  ||||||||    
T  30505752 gttgaaggagaaattttcttcacttcccttcaattatcatggttggtggtttagtctgtttaccat 30505817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 44736075 - 44735982
Alignment:
Q  54 caggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtc 147  Q
    |||||||| |||||||| |||||  | || |||| ||||||||||| |||  ||  | ||||||||||||||| |||||| | |||||||||||    
T  44736075 caggtggtcgacaagattaagtccctcacttttatgtggttgaaggcgaagtttaatactcttcccttcaattttcatggttagtggcttagtc 44735982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 8462613 - 8462510
Alignment:
Q  54 caggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccattta 153  Q
    |||||||| || ||||| |||||| | || || | ||||||||||| |||| ||| |||||||||||||||||||||||| |||||||||||||  ||||    
T  8462613 caggtggttgataagattaagtcactcacattcatgtggttgaaggcgaaatttgcttctcttcccttcaattatcatggttggtggcttagtctgttta 8462514  T
Q  154 ccat 157  Q
    ||||    
T  8462513 ccat 8462510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 148
Target Start/End: Complemental strand, 33191268 - 33191209
Alignment:
Q  89 gtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtcc 148  Q
    |||||||||| ||||| ||| | |||||||||||||||||||||| ||||||||||||||    
T  33191268 gtggttgaagttgaaatttgatactcttcccttcaattatcatggttggtggcttagtcc 33191209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 173
Target Start/End: Original strand, 4784718 - 4784808
Alignment:
Q  84 tttaggtggttgaaggtgaaacttgtttctcttccct-tcaattatcatggctggtggcttagtccatttaccatccttggtataggctaa 173  Q
    |||| ||||||||||| ||||  ||||||||   ||| ||||||||||| |  ||||||||||||||||||||||||| ||||||||||||    
T  4784718 tttatgtggttgaaggggaaatatgtttctcactcctctcaattatcatagtcggtggcttagtccatttaccatcctcggtataggctaa 4784808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 33282844 - 33282917
Alignment:
Q  84 tttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    ||||||||||||||||  ||| ||| |||||| ||  ||||||||||||| |||||||||||||| ||||||||    
T  33282844 tttaggtggttgaaggaaaaatttgcttctctccctctcaattatcatggttggtggcttagtccgtttaccat 33282917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 37929136 - 37929200
Alignment:
Q  84 tttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtcc 148  Q
    ||||||||||||||||||||| ||  | |||||||||| || |||||||| ||||||||||||||    
T  37929136 tttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtcc 37929200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 7179095 - 7179030
Alignment:
Q  89 gtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttac 154  Q
    |||||||||||||||  ||||  |||||||||| || |||||||  ||||||||||||||| ||||    
T  7179095 gtggttgaaggtgaagtttgtaactcttccctttaactatcatgattggtggcttagtccaattac 7179030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 11324496 - 11324569
Alignment:
Q  84 tttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    |||| ||||||||||| |||| ||| |||||||||||||||||||||||| |||||||||||||| ||| ||||    
T  11324496 tttacgtggttgaaggcgaaatttgcttctcttcccttcaattatcatgggtggtggcttagtccgtttgccat 11324569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 154
Target Start/End: Complemental strand, 11298686 - 11298592
Alignment:
Q  60 gtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttac 154  Q
    ||||||| ||| ||||  ||||| |||  |||||||||||||||  ||||  |||||||||| || |||||||| ||||||||||||||||||||    
T  11298686 gtggacatgattaagttgttaacttttcagtggttgaaggtgaagtttgtcactcttccctttaactatcatggttggtggcttagtccatttac 11298592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 32533203 - 32533070
Alignment:
Q  15 aacaacaaaatctttaattctatggaaagtcctattacacaggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctc 114  Q
    ||||||||||| |||||||||| ||| ||  ||||||   |||||||||| | ||| ||||  ||||| || | |||||||||| ||||  ||| | |||    
T  32533203 aacaacaaaatttttaattctaaggatagctctattatgtaggtggtggataggattaagttgttaacattcaagtggttgaagatgaagtttgctactc 32533104  T
Q  115 ttcccttcaattatcatggctggtggcttagtcc 148  Q
    ||||||| || |||||||| ||||||||||||||    
T  32533103 ttccctttaactatcatggttggtggcttagtcc 32533070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 22469477 - 22469524
Alignment:
Q  110 ttctcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||    
T  22469477 ttctcttcccttcaattatcatgcttggtggcttagtccattcaccat 22469524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 2682791 - 2682864
Alignment:
Q  84 tttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    ||||||||||||||||||||| ||  | || ||| |||||||| |||||| |||||||||||||| || |||||    
T  2682791 tttaggtggttgaaggtgaaatttcctactattctcttcaattgtcatggttggtggcttagtcctttcaccat 2682864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 17292831 - 17292767
Alignment:
Q  89 gtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccattta 153  Q
    ||||||||| |  ||| ||| |||||||||||||||||||||||| || ||||||||||| ||||    
T  17292831 gtggttgaacgccaaatttgcttctcttcccttcaattatcatggttgatggcttagtccgttta 17292767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 154
Target Start/End: Complemental strand, 29321424 - 29321324
Alignment:
Q  54 caggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccattta 153  Q
    ||||||||||||| ||| ||||  ||||| ||   ||||||||| |||||  ||||  |||||||||| || ||| |||| |||||||||||||||||||    
T  29321424 caggtggtggacaggattaagttgttaactttccagtggttgaaagtgaagtttgtcactcttccctttaactatgatggttggtggcttagtccattta 29321325  T
Q  154 c 154  Q
    |    
T  29321324 c 29321324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 32196861 - 32196814
Alignment:
Q  110 ttctcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    |||||||||||||||||| ||||| || ||||||||||| ||||||||    
T  32196861 ttctcttcccttcaattaacatgggtgatggcttagtccgtttaccat 32196814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 148
Target Start/End: Complemental strand, 10303196 - 10303167
Alignment:
Q  119 cttcaattatcatggctggtggcttagtcc 148  Q
    ||||||||||||||||||||||||||||||    
T  10303196 cttcaattatcatggctggtggcttagtcc 10303167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 12187586 - 12187517
Alignment:
Q  82 cctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatt 151  Q
    |||||| ||||||||||| ||||||||| |||||| | || |||| |||||| | || ||||||||||||    
T  12187586 cctttacgtggttgaaggcgaaacttgtctctctttcgtttaattttcatggtttgttgcttagtccatt 12187517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 34714944 - 34715017
Alignment:
Q  84 tttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    |||||||||||||| |  ||| ||  |||||||||| ||||||| ||||| |||||||||||||  ||||||||    
T  34714944 tttaggtggttgaaagcaaaatttacttctcttcccatcaattaccatggttggtggcttagtctgtttaccat 34715017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 14001801 - 14001845
Alignment:
Q  113 tcttcccttcaattatcatggctggtggcttagtccatttaccat 157  Q
    |||| |||||||||||||| | |||||||||||| ||||||||||    
T  14001801 tcttgccttcaattatcatagttggtggcttagttcatttaccat 14001845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 154
Target Start/End: Original strand, 18673363 - 18673463
Alignment:
Q  54 caggtggtggacaagatcaagtcattaacctttaggtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttagtccattta 153  Q
    ||||||||||| || || |||||  | || |||| ||||||||||| ||||  |||   ||||||| ||||||||||||| ||||||||||| || ||||    
T  18673363 caggtggtggataaaattaagtctcttacttttatgtggttgaaggagaaatatgtcagtcttcccctcaattatcatggttggtggcttagcccgttta 18673462  T
Q  154 c 154  Q
    |    
T  18673463 c 18673463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 29599233 - 29599177
Alignment:
Q  89 gtggttgaaggtgaaacttgtttctcttcccttcaattatcatggctggtggcttag 145  Q
    ||||||||||||||||   | ||||||||||||||||||  |||| |||||||||||    
T  29599233 gtggttgaaggtgaaatacgcttctcttcccttcaattactatggttggtggcttag 29599177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University