View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12070_high_2 (Length: 439)
Name: NF12070_high_2
Description: NF12070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12070_high_2 |
 | |
|
| [»] scaffold0115 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 9470213 - 9469800
Alignment:
| Q |
1 |
tgcaccaaccacaacatatcataaatggaacacaaatacttgctttcnnnnnnnnnnnnngactaacatgaacaagtgttgtgacaattgattctttttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9470213 |
tgcaccaaccacaacatatcataaatggaacacaaacacttgctttcaaaaaatgaaaaagactaacatgaacaagtgttgtgacaattgattctttttt |
9470114 |
T |
|
| Q |
101 |
aagtttgaattatagaaaaatgaaatttagagaaacaaggagtcgatataaccttgaataactagttcaatcagacgttggcattgcgtcaatattccaa |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9470113 |
aagtttgaat---agaaaaatgaaatttagagaaacaaggagtcgatataaccttgaataactagttcaatcagacgttggcattgcgtcaatattccaa |
9470017 |
T |
|
| Q |
201 |
atagcaacatgtttttaataaaatgaatcttattagatcttactttcatataaaatctgcctagtgatttagttttgaacaacatcaattcatcttcaac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9470016 |
atagcaacatgtttttaataaaatgaatcttattagatcatactttcatataaaatctgcctagtgatttagttttgaacaacatcaattcatcttcaac |
9469917 |
T |
|
| Q |
301 |
catatagaacacaaacagaataccaaaaaattcaaggatttgatgatgacgacgaagggttagtttgacgatgatgaagggtttgatgttggtggctgag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9469916 |
catatagaacacaaacagaataccaaaaaattcaaggatttgatgatgacgacgaagggttagtttgacgaggatgaagggtttgatgttggtggctgag |
9469817 |
T |
|
| Q |
401 |
acggtggagggtggttggtga |
421 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
9469816 |
a----ggagggtggttggtga |
9469800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 68 - 187
Target Start/End: Original strand, 31001786 - 31001903
Alignment:
| Q |
68 |
atgaacaagtgttgtgacaattgattcttttttaagtttgaattatagaaaaatgaaatttagagaaacaaggagt-cgatataaccttgaataactagt |
166 |
Q |
| |
|
|||||||| ||||||||||| | |||||| ||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
31001786 |
atgaacaaatgttgtgacaacttattcttctttaagtttgaat---agaaaaatgaaatttagagaaacaaggattacgatataaccttgaataactagt |
31001882 |
T |
|
| Q |
167 |
tcaatcagacgttggcattgc |
187 |
Q |
| |
|
|||||| ||| |||||||||| |
|
|
| T |
31001883 |
tcaatcggactttggcattgc |
31001903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 62 - 187
Target Start/End: Original strand, 31003405 - 31003528
Alignment:
| Q |
62 |
actaacatgaacaagtgttgtgacaattgattcttttttaagtttgaattatagaaaaatgaaatttagagaaacaaggagt-cgatataaccttgaata |
160 |
Q |
| |
|
||||| |||||||| ||||||||||| | |||||| ||||||||||||| |||||||||||||||||||||||| ||| | | |||||| |||||||| |
|
|
| T |
31003405 |
actaatatgaacaaatgttgtgacaacttattcttctttaagtttgaat---agaaaaatgaaatttagagaaacagggattacaatataatcttgaata |
31003501 |
T |
|
| Q |
161 |
actagttcaatcagacgttggcattgc |
187 |
Q |
| |
|
|||||||||||||||| |||||||||| |
|
|
| T |
31003502 |
actagttcaatcagactttggcattgc |
31003528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 2530989 - 2530793
Alignment:
| Q |
1 |
tgcaccaaccacaacatatcataaatggaacacaaatacttgctttcnnnnnnnnnnnnngactaacatgaacaagtgttgtgacaattgattctttttt |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
2530989 |
tgcaccaaccacaacatagcataaatggaacacaaatacttgctttcaaaacatgaaaaatactaacatgtacaagtgttgtgacaattgattttttttt |
2530890 |
T |
|
| Q |
101 |
--------------aagtttgaattatagaaaaatgaaatttagagaaacaaggagtcgatataaccttgaataactagttcaatcagacgttggcattg |
186 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
2530889 |
ttttttttttttttaagtttgaatt---gaaaaatgaaatttagagaaacaaggagtgg-tataaccttgaataactagttcaatcagactttgacattg |
2530794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 38974 - 39165
Alignment:
| Q |
1 |
tgcaccaaccacaacatatcataaatggaacacaaatacttgctttcnnnnnnnnnnnnngactaacatgaacaagtgttgtgacaattgat-------- |
92 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||| |
|
|
| T |
38974 |
tgcaccaaccacaacatagcataaatggaacacaaatacttgctttcaaaacatgaaaaatactaacatga--aagagttgtgacaattgatttattttt |
39071 |
T |
|
| Q |
93 |
-tcttttttaagtttgaattatagaaaaatgaaatttagagaaacaaggagt-cgatataaccttga--ataactagttcaatcagacgttggcatt |
185 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| |||| |||||| ||||||| |||||||| |
|
|
| T |
39072 |
attttttttaagtttga---atagaaaaatgaaatttagagaaacaaggagtatggtataaccttgaatataattagttccatcagactttggcatt |
39165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University