View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12070_low_1 (Length: 844)

Name: NF12070_low_1
Description: NF12070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12070_low_1
NF12070_low_1
[»] chr6 (27 HSPs)
chr6 (39-844)||(6415279-6416067)
chr6 (668-843)||(6589322-6589497)
chr6 (664-842)||(7994182-7994360)
chr6 (657-844)||(6394778-6394965)
chr6 (657-843)||(6402774-6402960)
chr6 (666-844)||(6432084-6432262)
chr6 (666-843)||(7119080-7119257)
chr6 (666-844)||(6594604-6594782)
chr6 (666-843)||(7131558-7131735)
chr6 (709-840)||(6423183-6423314)
chr6 (657-844)||(14820607-14820794)
chr6 (730-844)||(6409993-6410107)
chr6 (658-844)||(14818297-14818483)
chr6 (650-843)||(6585236-6585429)
chr6 (660-844)||(6426428-6426612)
chr6 (664-843)||(19632360-19632539)
chr6 (657-838)||(11936279-11936460)
chr6 (657-838)||(11948259-11948440)
chr6 (657-832)||(10579746-10579922)
chr6 (750-836)||(14802343-14802429)
chr6 (664-840)||(6603204-6603380)
chr6 (680-844)||(9411292-9411456)
chr6 (594-658)||(16566733-16566797)
chr6 (750-836)||(6596934-6597020)
chr6 (792-844)||(12102315-12102367)
chr6 (750-840)||(6586112-6586202)
chr6 (657-698)||(28934963-28935004)
[»] chr3 (6 HSPs)
chr3 (574-843)||(13470731-13471002)
chr3 (593-843)||(51764439-51764689)
chr3 (657-843)||(51113780-51113966)
chr3 (100-207)||(13471128-13471236)
chr3 (715-838)||(1657223-1657346)
chr3 (666-844)||(51120891-51121069)
[»] chr7 (3 HSPs)
chr7 (423-843)||(10614289-10614693)
chr7 (657-844)||(15092149-15092336)
chr7 (84-213)||(10613948-10614079)
[»] chr4 (25 HSPs)
chr4 (662-843)||(53761771-53761949)
chr4 (657-844)||(1537765-1537952)
chr4 (657-843)||(546827-547013)
chr4 (664-841)||(8184031-8184208)
chr4 (657-841)||(12121458-12121642)
chr4 (657-817)||(640829-640989)
chr4 (727-843)||(1552766-1552882)
chr4 (733-844)||(1524484-1524595)
chr4 (736-843)||(1548423-1548530)
chr4 (657-838)||(644745-644925)
chr4 (664-842)||(8187091-8187269)
chr4 (657-842)||(1489361-1489546)
chr4 (733-842)||(1513407-1513516)
chr4 (658-815)||(55908755-55908912)
chr4 (757-841)||(1519143-1519227)
chr4 (750-843)||(532196-532289)
chr4 (657-843)||(55505107-55505290)
chr4 (664-843)||(570272-570451)
chr4 (657-838)||(553393-553574)
chr4 (750-833)||(659718-659799)
chr4 (663-835)||(1495926-1496098)
chr4 (786-842)||(1600462-1600518)
chr4 (717-817)||(3438591-3438690)
chr4 (663-814)||(1517524-1517675)
chr4 (798-836)||(21834384-21834422)
[»] chr2 (2 HSPs)
chr2 (664-843)||(45245084-45245263)
chr2 (658-815)||(1037691-1037848)
[»] chr1 (6 HSPs)
chr1 (649-843)||(19468498-19468692)
chr1 (670-809)||(7554415-7554554)
chr1 (736-833)||(9586632-9586729)
chr1 (750-840)||(52082588-52082678)
chr1 (750-824)||(9581076-9581152)
chr1 (750-815)||(43634914-43634979)
[»] chr5 (6 HSPs)
chr5 (650-843)||(20478081-20478274)
chr5 (677-840)||(41889556-41889719)
chr5 (673-835)||(41901542-41901704)
chr5 (733-835)||(37937877-37937979)
chr5 (664-840)||(32267396-32267572)
chr5 (755-836)||(38267562-38267643)
[»] chr8 (8 HSPs)
chr8 (733-843)||(18315272-18315382)
chr8 (664-840)||(27922429-27922605)
chr8 (733-843)||(32151291-32151401)
chr8 (657-838)||(28246299-28246478)
chr8 (726-841)||(34936164-34936279)
chr8 (667-817)||(17628039-17628189)
chr8 (664-843)||(21235479-21235658)
chr8 (798-841)||(17636402-17636445)
[»] scaffold0041 (1 HSPs)
scaffold0041 (657-815)||(39098-39256)
[»] scaffold0807 (1 HSPs)
scaffold0807 (750-840)||(1466-1559)
[»] scaffold0295 (1 HSPs)
scaffold0295 (664-815)||(651-802)


Alignment Details
Target: chr6 (Bit Score: 690; Significance: 0; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 690; E-Value: 0
Query Start/End: Original strand, 39 - 844
Target Start/End: Original strand, 6415279 - 6416067
Alignment:
Q  39 tccttccaacagaaaagaaaaagtctgcaaatcgagttcaattgtccaattgattgaaatgacatcactacaccaagagagaatcacacagcgaagaaaa 138  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6415279 tccttccaacagaaaagaaaaagtctgcaaatggagttcaattgcccaattgattgaaatgacatcactacaccaagagagaatcacacagcgaagaaaa 6415378  T
Q  139 aagaccaagaaaggctcaccaaacagacattataacaaagaaaacttgacagaaataaaatatcagagagtcaatgaaagatgtcaaatgaggttactaa 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6415379 aagaccaagaaaggctcaccaaacagacattataacaaagaaaacttgacagaaataaaaaatcagagagtcaatgaaagatgtcaaatgaggttactaa 6415478  T
Q  239 tgaagtcacagccaatgatctcgagatattgtttcaattaaataatattaattgacaacggcaggcagggtaagactcactaaactgacatgaaaacaaa 338  Q
     ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6415479 agaagtcacagccaatgatctcgagatattgtttcaattaaacaatattaattgacaacggcaggcagggtaacactcactaaactgacatgaaaacaaa 6415578  T
Q  339 caaaacttgacaacagctcacaaaaacacgccattgcggcctatagcgccaccatagtggacgccaacattcgtgtggctattaaaaaatccggcattcc 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |||||||||||||||||||    
T  6415579 caaaacttgacaacagctcacaaaaacacgccattgcggcctatagcgccaccatagtggacgccgacattcctctggctgttaaaaaatccggcattcc 6415678  T
Q  439 accattgcgccacaatttaacaactatagcattacactgttcactatatacagatattaaactattacttaagagaattatcatacacagactaatgagt 538  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6415679 accattgcgccacaatttaacaactatagcattacactgttcactatatacagatattaaactattacttcagagaattatcatacacagactaatgagt 6415778  T
Q  539 aaacagacatttgtatgttgacattttaaaatagtaatttcataggaaattaagaaacttacagagttcaaaatttcagcacaaccctttaagaatacta 638  Q
    |||||||||||||                 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6415779 aaacagacatttg-----------------aaagtaatttcataggaaattaagaaacttacagagttcaaaatttcagcacaaccctttaagaatacta 6415861  T
Q  639 gtaaagaagatatccatgctctcttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgc 738  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  6415862 gtaaagaagatatccatgctctcttagttgtgtgcagttctctaccacatgtttcactcccacttctgtgacattatcacaaaattcaagtaatagttgc 6415961  T
Q  739 aaaagcccgctacaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttca 838  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6415962 aaaagcccgctacaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagtcca 6416061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 668 - 843
Target Start/End: Complemental strand, 6589497 - 6589322
Alignment:
Q  668 gtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatcac 767  Q
    |||||||||| |||||||||||||||||||||||  | ||||||| || ||||| || |||| ||| ||||| ||||||  ||||||| ||||||||||     
T  6589497 gtgtgcagttttctaccacatgtttcactccctcctccgtgacataattacaaagttgaagtgataattgcataagccctatacaattttttgagatcag 6589398  T
Q  768 atagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattcca 843  Q
    ||| || |||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  6589397 atatagtgttttatcattaacatttgtatttgacaagttcaacacctccagcatgggaactacaaagttcattcca 6589322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 664 - 842
Target Start/End: Complemental strand, 7994360 - 7994182
Alignment:
Q  664 agttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgaga 763  Q
    ||||| |||||||| |||||||||||||||||||||||  | || |||| || ||||| ||||||||||||||||||||| ||   ||||||||||||||    
T  7994360 agttgcgtgcagttttctaccacatgtttcactccctcctcggtaacatcattacaaagttcaagtaatagttgcaaaagtccagaacaattctttgaga 7994261  T
Q  764 tcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattcc 842  Q
    ||||||| || ||||  ||||||||| |||||||||||| |||||||||||| || || ||||||||||||||||||||    
T  7994260 tcacatatagtgtttcgtcattaacccttgtatttgacatgttcaacacctctagcttcggaactacaaagttcattcc 7994182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 657 - 844
Target Start/End: Original strand, 6394778 - 6394965
Alignment:
Q  657 ctctcttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattc 756  Q
    |||||| | |||||||||||| ||||||||||||| ||| |||| | |||||||||| | ||||   ||||||  || |||||||||||| | |||||||    
T  6394778 ctctctcaattgtgtgcagttttctaccacatgttccacacccttttctgtgacatttttacaattatcaagttgtaattgcaaaagcccacaacaattc 6394877  T
Q  757 tttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattccat 844  Q
    |||||||||||| | ||||||| ||||| |||  |||||||||||||||||||||||||||| | ||||||| |||||||||||||||    
T  6394878 tttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccat 6394965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 657 - 843
Target Start/End: Original strand, 6402774 - 6402960
Alignment:
Q  657 ctctcttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaat-tcaagtaatagttgcaaaagcccgctacaatt 755  Q
    |||||| |||||||| ||||| |||| |||||||||| |||||| | |||||||||||| ||||  | |||| |||||||| ||||||||| ||||||||    
T  6402774 ctctctcagttgtgtacagttttctatcacatgtttcgctcccttttctgtgacattataacaatctctcaa-taatagtttcaaaagcccactacaatt 6402872  T
Q  756 ctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattcca 843  Q
    |||||||||||||||||| |||| ||||| |||||| |||| ||||||||||||||| || || | ||||||| ||||||| ||||||    
T  6402873 ctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagtttattcca 6402960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 666 - 844
Target Start/End: Original strand, 6432084 - 6432262
Alignment:
Q  666 ttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatc 765  Q
    ||||||||| || ||||||||| ||||||||||||    ||||||||||||||||   |  || |||||||||| |||||| | |||||||||| |||||    
T  6432084 ttgtgtgcatttttctaccacaagtttcactcccttctgtgtgacattatcacaattgtacaggaatagttgcagaagcccacaacaattctttaagatc 6432183  T
Q  766 acatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattccat 844  Q
    ||||| || |||| ||||| |||  |||||||||||||||||||||||| ||| ||||||||| |||||||||||||||    
T  6432184 acataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcattccat 6432262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 666 - 843
Target Start/End: Original strand, 7119080 - 7119257
Alignment:
Q  666 ttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatc 765  Q
    |||||||||||| ||| |||||||||||||| | | |  |||||||| || ||||  ||  |||||||||| ||||||||||| ||||||||| ||||||    
T  7119080 ttgtgtgcagttttcttccacatgtttcacttctttttttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 7119179  T
Q  766 acatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattcca 843  Q
    |||| ||| |||| ||||| |||||| |||| ||||||||||||||||||||| | | |||| |||||||||||||||    
T  7119180 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggtgaacaacaaagttcattcca 7119257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 666 - 844
Target Start/End: Complemental strand, 6594782 - 6594604
Alignment:
Q  666 ttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatc 765  Q
    |||||||||||| ||||||||||||||  |||||||  |||||| || |||||||  ||| |||  |||||| |||||||| | ||||||||||||||||    
T  6594782 ttgtgtgcagttttctaccacatgtttggctccctcctctgtgagatgatcacaattttctagttttagttgtaaaagcccacaacaattctttgagatc 6594683  T
Q  766 acatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattccat 844  Q
    |||   || || | ||||| ||||| |||||||||||||| |||||||||||| |||||||||| |||||| |||||||    
T  6594682 acacgtagtgtctcatcatcaacctctgtatttgacaagtacaacacctccagtttgggaactaaaaagtttattccat 6594604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 666 - 843
Target Start/End: Original strand, 7131558 - 7131735
Alignment:
Q  666 ttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatc 765  Q
    |||||||||||| ||| |||||||||||||| | |    |||||||| || ||||  ||  |||||||||| ||||||||||| ||||||||| ||||||    
T  7131558 ttgtgtgcagttttcttccacatgtttcactgctttgtttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 7131657  T
Q  766 acatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattcca 843  Q
    |||| ||| |||| ||||| |||||| |||| ||||||||||||||||||||| | | |||| |||||||||||||||    
T  7131658 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggcgaacaacaaagttcattcca 7131735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 709 - 840
Target Start/End: Original strand, 6423183 - 6423314
Alignment:
Q  709 acattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttca 808  Q
    |||| |||||||  |||||||||||||||||||| ||| | |||| ||||||||||| ||||||| ||||||||  ||||  ||||||||||||||||||    
T  6423183 acataatcacaatcttcaagtaatagttgcaaaatcccacaacaactctttgagatcgcatagagtgttttatcgctaactcttgtatttgacaagttca 6423282  T
Q  809 acacctccaggttgggaactacaaagttcatt 840  Q
    |||||||||| |||||||||  ||||||||||    
T  6423283 acacctccagcttgggaacttaaaagttcatt 6423314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 657 - 844
Target Start/End: Original strand, 14820607 - 14820794
Alignment:
Q  657 ctctcttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattc 756  Q
    |||||| || ||||||||||| | ||||||||||||||| ||||   ||||||||| || |||   ||||||||||| | |||||||||| | |||||||    
T  14820607 ctctctcagctgtgtgcagttttttaccacatgtttcacacccttctctgtgacatcattacatttttcaagtaataatcgcaaaagcccacaacaattc 14820706  T
Q  757 tttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattccat 844  Q
    || ||||||| ||| || |||| || || ||||||||||||||| |||||||||||||| |  ||||||||| ||||||| |||||||    
T  14820707 ttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgggaactgcaaagttaattccat 14820794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 730 - 844
Target Start/End: Original strand, 6409993 - 6410107
Alignment:
Q  730 aatagttgcaaaagcccgctacaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaacta 829  Q
    ||||||||||||||||  | ||||||||||||||||||||| ||||||| ||||| |||  ||||||||||| |||||||||||| ||| |||||||||     
T  6409993 aatagttgcaaaagccgacaacaattctttgagatcacataaagagtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaactt 6410092  T
Q  830 caaagttcattccat 844  Q
    |||||||||||||||    
T  6410093 caaagttcattccat 6410107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 658 - 844
Target Start/End: Original strand, 14818297 - 14818483
Alignment:
Q  658 tctcttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattct 757  Q
    ||||| || ||||||||||| ||||| ||||||||||| ||||   |||||||||||| ||||  ||||||||||| | ||||||||||   ||||||||    
T  14818297 tctctcagctgtgtgcagttttctactacatgtttcacacccttctctgtgacattattacaattttcaagtaataatcgcaaaagcccagaacaattct 14818396  T
Q  758 ttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattccat 844  Q
    | ||||||| ||| || |||| || || ||||||||||||||| |||||||||||||| |  ||| ||||| ||||||| |||||||    
T  14818397 tggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgagaactgcaaagttaattccat 14818483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 650 - 843
Target Start/End: Complemental strand, 6585429 - 6585236
Alignment:
Q  650 atccatgctctcttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgct 749  Q
    ||||||| | ||| |||||||||||  | |||||||||||||||| |||||   |||||||||| ||||||  ||  |||||||||| ||||||| |       
T  6585429 atccatgttttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctctgtgacattttcacaacctttcagtaatagttccaaaagcgcaga 6585330  T
Q  750 acaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattcca 843  Q
    |||| ||||||||||||||||||| |||| ||||| ||||||||||| |||||||||||| |||||||  | || ||||| |||||| ||||||    
T  6585329 acaactctttgagatcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattcca 6585236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 660 - 844
Target Start/End: Original strand, 6426428 - 6426612
Alignment:
Q  660 tcttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattcttt 759  Q
    |||||||||||||||||| |||||||| |||||||| ||||    |||||||   | ||||  ||||||||||| |||||||| ||  | ||||||||||    
T  6426428 tcttagttgtgtgcagttttctaccacttgtttcacacccttcattgtgacacctttacaattttcaagtaataattgcaaaatccgacaacaattcttt 6426527  T
Q  760 gagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattccat 844  Q
    |||||| |||| | ||||| ||||| ||   |||| |||||||| |||||||||||||| | ||||||| |||||||||||||||    
T  6426528 gagatcgcataaaaagtttcatcatcaatgcttgtgtttgacaaattcaacacctccagctcgggaactgcaaagttcattccat 6426612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 664 - 843
Target Start/End: Original strand, 19632360 - 19632539
Alignment:
Q  664 agttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgaga 763  Q
    |||||| ||||||| |||||||| |||||||||||||   |||||| |||| |||||  ||  ||||| |||||||||||||| | ||||||||||||||    
T  19632360 agttgtttgcagttttctaccacgtgtttcactcccttctctgtgatattagcacaatttttcagtaagagttgcaaaagcccacaacaattctttgaga 19632459  T
Q  764 tcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattcca 843  Q
    ||||| | ||    | ||||| |||||||||||  ||||||| ||||||||| || |||||||||| |||||| ||||||    
T  19632460 tcacaaaaagttgctcatcatcaacctttgtatacgacaagtccaacacctctagcttgggaactagaaagtttattcca 19632539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 657 - 838
Target Start/End: Complemental strand, 11936460 - 11936279
Alignment:
Q  657 ctctcttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattc 756  Q
    |||||| | ||||||||| || || ||||||||  ||||||| |   ||||||||   |||||||||| |||| | |||||||||||||| |||||| ||    
T  11936460 ctctctcatttgtgtgcatttttcaaccacatgcgtcactcctttgtctgtgacaccttcacaaaatttaagtgacagttgcaaaagcccactacaactc 11936361  T
Q  757 tttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttca 838  Q
    |||||||||  |||||| | |||||| | |||  |||||  |||||||| |||||||||||| ||||||||| |||||||||    
T  11936360 tttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 11936279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 657 - 838
Target Start/End: Complemental strand, 11948440 - 11948259
Alignment:
Q  657 ctctcttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattc 756  Q
    |||||| | ||||||||| || || ||||||||  ||||||| |   ||||||||   |||||||||| |||| | |||||||||||||| |||||| ||    
T  11948440 ctctctcatttgtgtgcatttttcaaccacatgcgtcactcctttgtctgtgacaccttcacaaaatttaagtgacagttgcaaaagcccactacaactc 11948341  T
Q  757 tttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttca 838  Q
    |||||||||  |||||| | |||||| | |||  |||||  |||||||| |||||||||||| ||||||||| |||||||||    
T  11948340 tttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 11948259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 657 - 832
Target Start/End: Complemental strand, 10579922 - 10579746
Alignment:
Q  657 ctctcttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaa-tagttgcaaaagcccgctacaatt 755  Q
    |||||| |||||||||||||| |||||||||||||| |||||||    ||||||  | | |||   ||  ||||| ||||| ||||||||  | ||||||    
T  10579922 ctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaaatagttccaaaagccgacaacaatt 10579823  T
Q  756 ctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaa 832  Q
    ||||||||||  |||||| |||||||||| ||| ||||||| ||||||||||||||||||||| | ||||| |||||    
T  10579822 ctttgagatcgaatagagtgttttatcatcaacttttgtatatgacaagttcaacacctccagctggggaattacaa 10579746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 750 - 836
Target Start/End: Original strand, 14802343 - 14802429
Alignment:
Q  750 acaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagtt 836  Q
    |||||||||||| ||||||||||| |||| ||||| |||||||||||||||||| |||||||| ||||  ||||||||| |||||||    
T  14802343 acaattctttgaaatcacatagagtgtttcatcatcaacctttgtatttgacaaattcaacacttccatcttgggaacttcaaagtt 14802429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 664 - 840
Target Start/End: Complemental strand, 6603380 - 6603204
Alignment:
Q  664 agttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgaga 763  Q
    |||||| ||||||| |||||||||||||||||||| |   ||||||||| || |||| |||  | |||||||| |||||||||   |||| |||||||||    
T  6603380 agttgtttgcagttttctaccacatgtttcactcctttctctgtgacataataacaatatttcaataatagttccaaaagcccaggacaactctttgaga 6603281  T
Q  764 tcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcatt 840  Q
    || ||||||  |||| ||||| |||   ||||| || ||||| ||||||||  || ||||||| |||||||||||||    
T  6603280 tcgcatagactgtttcatcatcaacacctgtatctgccaagtccaacacctgtagcttgggaagtacaaagttcatt 6603204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 680 - 844
Target Start/End: Original strand, 9411292 - 9411456
Alignment:
Q  680 ctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatcacatagagagtttt 779  Q
    ||||||||||  |||||||||   || ||||||||| |||  |||  ||||| ||||||||||| || | |||||||||||||||| |||||||  |||     
T  9411292 ctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttc 9411391  T
Q  780 atcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattccat 844  Q
    |||   |||   ||||| ||||||||||||||||||||| ||||||||  ||||||||| |||||    
T  9411392 atcgaaaacacctgtatatgacaagttcaacacctccagcttgggaacctcaaagttcaatccat 9411456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 594 - 658
Target Start/End: Original strand, 16566733 - 16566797
Alignment:
Q  594 aacttacagagttcaaaatttcagcacaaccctttaagaatactagtaaagaagatatccatgct 658  Q
    |||||| |||||||||| ||||| ||||||  ||| |||||||||||||||||||||||||||||    
T  16566733 aacttatagagttcaaactttcatcacaacattttcagaatactagtaaagaagatatccatgct 16566797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 750 - 836
Target Start/End: Complemental strand, 6597020 - 6596934
Alignment:
Q  750 acaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagtt 836  Q
    |||||||||||||||  | ||||| |||| ||||| ||| |||||| |||||||||||||||||||||| | ||||| | |||||||    
T  6597020 acaattctttgagatagcgtagagtgtttcatcatcaacatttgtacttgacaagttcaacacctccagctggggaatttcaaagtt 6596934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 792 - 844
Target Start/End: Original strand, 12102315 - 12102367
Alignment:
Q  792 tgtatttgacaagttcaacacctccaggttgggaactacaaagttcattccat 844  Q
    ||||| ||||||||||||||||||||| ||||||||| ||||||||| |||||    
T  12102315 tgtatgtgacaagttcaacacctccagtttgggaacttcaaagttcaatccat 12102367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 750 - 840
Target Start/End: Complemental strand, 6586202 - 6586112
Alignment:
Q  750 acaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcatt 840  Q
    |||| ||||||||||| || |||| |||| ||||| ||| | ||| |||||||| | ||||||||| || ||||||| |||||||||||||    
T  6586202 acaaatctttgagatcgcacagagtgtttcatcatgaacatctgtttttgacaaatccaacacctctagcttgggaagtacaaagttcatt 6586112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 698
Target Start/End: Original strand, 28934963 - 28935004
Alignment:
Q  657 ctctcttagttgtgtgcagttctctaccacatgtttcactcc 698  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  28934963 ctctcttagttgtgtgcaattttctaccacatgcttcactcc 28935004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 574 - 843
Target Start/End: Complemental strand, 13471002 - 13470731
Alignment:
Q  574 aatttcataggaaattaagaaacttacagagttcaaaa--tttcagcacaaccctttaagaatactagtaaagaagatatccatgctctcttagttgtgt 671  Q
    ||||||| || ||||||||||||||||||||||||||   |||||||||||| |||    |||||||||||||||||||||||||||||||||| |||||    
T  13471002 aatttcagagaaaattaagaaacttacagagttcaaacactttcagcacaacacttccgaaatactagtaaagaagatatccatgctctcttagctgtgt 13470903  T
Q  672 gcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatcacatag 771  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||    
T  13470902 gcagttctctaccacatgtttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccacaacaattctttgagatcatatag 13470803  T
Q  772 agagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattcca 843  Q
    || |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  13470802 agtgttttatcattaacctttgtatttgacaagttcaacacctccagattgggaacaacaaagttcattcca 13470731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 593 - 843
Target Start/End: Complemental strand, 51764689 - 51764439
Alignment:
Q  593 aaacttacagagttcaaaatttcagcacaaccctttaagaatactagtaaagaagatatccatgctctcttagttgtgtgcagttctctaccacatgttt 692  Q
    ||||| |||||||||||| |||||||||| | |||| | ||||||||||||||||     | || ||||| | |||||||||||| || |||||||||||    
T  51764689 aaactaacagagttcaaactttcagcacagcactttcaaaatactagtaaagaaggcgatcttgttctctcaattgtgtgcagttttcaaccacatgttt 51764590  T
Q  693 cactccct-ctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatcacatagagagttttatcattaacctt 791  Q
    |||||||| ||||| ||||||||||||||  ||| |||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||| ||| ||    
T  51764589 cactcccttctcct-tgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattctttgagatcgcatagagtgttttatcatcaacttt 51764491  T
Q  792 tgtatttgacaagttcaacacctccaggttgggaactacaaagttcattcca 843  Q
    ||||  ||||||||  ||||||||||| || |||||| ||||||||||||||    
T  51764490 tgtaaatgacaagtctaacacctccagcttcggaactgcaaagttcattcca 51764439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 657 - 843
Target Start/End: Complemental strand, 51113966 - 51113780
Alignment:
Q  657 ctctcttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattc 756  Q
    ||||||||||| |||||| || ||||||||||| ||||||||||   |||||||||  | ||||  ||  ||||| |||||||||||||| | |||| ||    
T  51113966 ctctcttagttttgtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaactc 51113867  T
Q  757 tttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattcca 843  Q
    || |||||||||||||| |||| ||||| |||| |||||||||||||||  ||||||||||| |||||| || ||||||||||||||    
T  51113866 ttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattcca 51113780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 100 - 207
Target Start/End: Complemental strand, 13471236 - 13471128
Alignment:
Q  100 acatcactacaccaa-gagagaatcacacagcgaagaaaaaagaccaagaaaggctcaccaaacagacattataacaaagaaaacttgacagaaataaaa 198  Q
    ||||||||||||||| || ||||||| | || | ||||||||||||||||||||||||  |||||||||| | |||||| |||||||||||| ||| |||    
T  13471236 acatcactacaccaaagaaagaatcatatagtgcagaaaaaagaccaagaaaggctcagtaaacagacatgaaaacaaacaaaacttgacagcaatgaaa 13471137  T
Q  199 tatcagaga 207  Q
     ||||||||    
T  13471136 aatcagaga 13471128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 715 - 838
Target Start/End: Original strand, 1657223 - 1657346
Alignment:
Q  715 tcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacct 814  Q
    |||||||||| |||| | ||||||||||||||||| ||| |||||||||||  |||||| | | |||  | |||  |||||  |||||||| ||||||||    
T  1657223 tcacaaaatttaagtgacagttgcaaaagcccgctgcaactctttgagatccaatagagtgatatattgtcaactcttgtaaatgacaagtccaacacct 1657322  T
Q  815 ccaggttgggaactacaaagttca 838  Q
    |||| ||||||||| |||||||||    
T  1657323 ccagtttgggaacttcaaagttca 1657346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 666 - 844
Target Start/End: Complemental strand, 51121069 - 51120891
Alignment:
Q  666 ttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatc 765  Q
    |||||||||||| |||||||||||||||||||| | |  ||||||||    |||   ||| ||  | | |||||||||||| | |||| ||||||||||     
T  51121069 ttgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctttgagatt 51120970  T
Q  766 acatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattccat 844  Q
    ||||| ||  ||| ||||| |||  ||||||  |||||||||||||||||||  ||| ||||| |||||||||||||||    
T  51120969 acatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccat 51120891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 182; Significance: 6e-98; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 423 - 843
Target Start/End: Original strand, 10614289 - 10614693
Alignment:
Q  423 aaaaatccggcattccaccattgcgccacaatttaacaactatagcattacactgttcactatatacagatattaaactattacttaagagaattatcat 522  Q
    ||||||||| ||||||||||| ||||||| ||||||||| | |||||||||||||| || |||||| | |||||||||||||||||| |  |||||||||    
T  10614289 aaaaatccgccattccaccatggcgccaccatttaacaattttagcattacactgtacattatataaaaatattaaactattacttaggc-aattatcat 10614387  T
Q  523 acacagactaatgagtaaacagacatttgtatgttgacattttaaaatagtaatttcataggaaattaagaaacttacagagttcaaaatttcagcacaa 622  Q
     || ||||| |||||||||   ||||||||| |||||||||| |||| ||||||||   || |||||| ||||||||||||||||||| ||||||         
T  10614388 gcatagactgatgagtaaatgcacatttgtaagttgacatttaaaaa-agtaatttatgagaaaattatgaaacttacagagttcaaactttcag----- 10614481  T
Q  623 ccctttaagaatactagtaaagaagatatccatgctctcttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaa 722  Q
             ||||||||||||||||||| ||||||||||| | |||  ||||||| |||||||||||||||||||| ||| |||||||||||| | |||     
T  10614482 ---------aatactagtaaagaagatacccatgctctctcaattgcatgcagttttctaccacatgtttcactccttcttctgtgacattatgagaaag 10614572  T
Q  723 ttcaagtaatagttgcaaaagcccgctacaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttg 822  Q
    |||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||    
T  10614573 ttcaagtaatagttgcaaaagcccactacagttcttcgagatcacatagagtgttttatcattaaccttcgtatttgacaagttcaacacctccagattg 10614672  T
Q  823 ggaactacaaagttcattcca 843  Q
    ||||| |||| ||||||||||    
T  10614673 ggaacaacaacgttcattcca 10614693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 657 - 844
Target Start/End: Complemental strand, 15092336 - 15092149
Alignment:
Q  657 ctctcttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattc 756  Q
    |||||| | |||||||||||| |||| |||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||| | |||||||    
T  15092336 ctctctcaattgtgtgcagttttctagcacatgtttcactcccacttctgtgacattataacaaaattcaagtaatagttgcaaaagcccacaacaattc 15092237  T
Q  757 tttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattccat 844  Q
    ||||||||| ||||||| |||||||||||||||||||| | |||||| |||||||||||||| | ||||||| |||||||||||||||    
T  15092236 tttgagatcgcatagagtgttttatcattaacctttgtttctgacaaattcaacacctccagctcgggaactgcaaagttcattccat 15092149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 213
Target Start/End: Original strand, 10613948 - 10614079
Alignment:
Q  84 ccaattgattgaaatgacatcactacaccaagagagaatcacacagcgaagaaaaaaga---ccaagaaaggctcaccaaacagacattataacaaagaa 180  Q
    ||||||||||||||  ||||| ||||||||||| | |||||| ||  |||||||||| |   ||| ||||||||||| |||||||||||| |||||| ||    
T  10613948 ccaattgattgaaactacatc-ctacaccaagatataatcacgcattgaagaaaaaaaaaaaccaggaaaggctcactaaacagacattaaaacaaaaaa 10614046  T
Q  181 aacttgacagaaataaaatatcagagagtcaat 213  Q
    ||  |||||  ||| ||| |||||||| |||||    
T  10614047 aatatgacatcaatgaaaaatcagagaatcaat 10614079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 4e-34; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 662 - 843
Target Start/End: Complemental strand, 53761949 - 53761771
Alignment:
Q  662 ttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttga 761  Q
    |||||||||||||||| ||| ||||||||||||||||||   | |||||||||||||||  ||  ||||||| |||||||||||| | ||||||||| ||    
T  53761949 ttagttgtgtgcagttttcttccacatgtttcactcccttgtccgtgacattatcacaatgtttcagtaata-ttgcaaaagcccacgacaattcttcga 53761851  T
Q  762 gatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattcca 843  Q
    |||||||  ||| |||||||| ||||| || |||  ||||||||||||| |||| || ||||||||||||||||||||||||    
T  53761850 gatcaca--gagtgttttatcgttaactttcgtaaatgacaagttcaacgcctctagcttgggaactacaaagttcattcca 53761771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 657 - 844
Target Start/End: Complemental strand, 1537952 - 1537765
Alignment:
Q  657 ctctcttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattc 756  Q
    |||||||||||| ||||| || |||| |||||  ||||||||||    |||||||  || ||||| ||| ||||| |||||||||||||| | ||||  |    
T  1537952 ctctcttagttgagtgcatttttctagcacatacttcactcccttctgtgtgacaagataacaaagttccagtaaaagttgcaaaagcccacgacaacac 1537853  T
Q  757 tttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattccat 844  Q
    |||||||| ||| | || ||||| |||||||| ||||||| ||||||||||||||| || || ||||||||| |||||||||||||||    
T  1537852 tttgagattacacacagtgttttgtcattaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattccat 1537765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 657 - 843
Target Start/End: Original strand, 546827 - 547013
Alignment:
Q  657 ctctcttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattc 756  Q
    ||||||||||| ||||||||| |||| |||||||||||||||||   ||||||||| |  |||   ||| ||||| | || ||||||||| | |||| ||    
T  546827 ctctcttagttttgtgcagttttctagcacatgtttcactcccttctctgtgacatgaaaacattcttccagtaacaattccaaaagcccacaacaactc 546926  T
Q  757 tttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattcca 843  Q
    ||||||||||||||||| |||| |||||| ||  |||||  ||||||||||| ||||||||  || |||||| ||||||||||||||    
T  546927 tttgagatcacatagagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatttaggaacttcaaagttcattcca 547013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 664 - 841
Target Start/End: Complemental strand, 8184208 - 8184031
Alignment:
Q  664 agttgtgtgcagttctctaccacatgtttcactccctctcctgtga-cattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgag 762  Q
    ||||||||||| || |||| |||||| |||||||||||  |||||| |||| ||||||  ||| ||||| |||| ||||||||| | |||| ||||||||    
T  8184208 agttgtgtgcaattttctagcacatgcttcactccctcatctgtgatcatt-tcacaattttccagtaacagttccaaaagcccacaacaactctttgag 8184110  T
Q  763 atcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattc 841  Q
    ||  ||||||| | | |||||| |||  |||||| |||||||||||||||||| || || |||||| ||||||||||||    
T  8184109 attgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttcattc 8184031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 657 - 841
Target Start/End: Complemental strand, 12121642 - 12121458
Alignment:
Q  657 ctctcttagttgtgtgcagttctctaccacatgtttcactccc-tctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaatt 755  Q
    |||||||||||||||||| || ||||||||||| ||||||||| |||| |||||||  |   ||  |||| ||| | |||||||||||||| |  |||      
T  12121642 ctctcttagttgtgtgcatttttctaccacatgcttcactcccatctc-tgtgacaaaaaagcaccattccagtgagagttgcaaaagcccacggcaaca 12121544  T
Q  756 ctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattc 841  Q
    ||||||||| ||  |||| |||| ||||| ||| ||||||| ||||||||||||||| || || ||||||||| ||||||||||||    
T  12121543 ctttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattc 12121458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 657 - 817
Target Start/End: Original strand, 640829 - 640989
Alignment:
Q  657 ctctcttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattc 756  Q
    |||||||| || | ||||||| ||||||||||| ||||||||||    ||| |||| || ||||  ||| ||||| || |||||||| || |  ||||||    
T  640829 ctctcttaattctttgcagttttctaccacatgattcactcccttctttgttacataatgacaatcttccagtaacagatgcaaaagaccacggcaattc 640928  T
Q  757 tttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctcca 817  Q
    |||||| |||| ||||| |||| ||||| ||| ||||||| ||||||||||||||||||||    
T  640929 tttgaggtcacgtagagtgtttcatcatcaacgtttgtatctgacaagttcaacacctcca 640989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 727 - 843
Target Start/End: Complemental strand, 1552882 - 1552766
Alignment:
Q  727 agtaatagttgcaaaagcccgctacaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaa 826  Q
    ||||| || ||||||||||| | |||||||||||| ||||||| ||| |||| ||||||||  ||||||| |||||| |||||||| ||||| |||||||    
T  1552882 agtaacagctgcaaaagcccacgacaattctttgatatcacattgagtgtttcatcattaatatttgtatgtgacaaattcaacacttccagtttgggaa 1552783  T
Q  827 ctacaaagttcattcca 843  Q
     | ||||||||| ||||    
T  1552782 tttcaaagttcagtcca 1552766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 733 - 844
Target Start/End: Complemental strand, 1524595 - 1524484
Alignment:
Q  733 agttgcaaaagcccgctacaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaa 832  Q
    |||||||||||||| | |||| ||| |||||||| |||||| |||| ||||| |||  |||||  |||||| |||||||||||||  ||||||||| |||    
T  1524595 agttgcaaaagcccacgacaactctgtgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaa 1524496  T
Q  833 agttcattccat 844  Q
    ||||||||||||    
T  1524495 agttcattccat 1524484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 736 - 843
Target Start/End: Complemental strand, 1548530 - 1548423
Alignment:
Q  736 tgcaaaagcccgctacaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagt 835  Q
    ||||||||||| | |||| ||||||||||||||| ||| |||| ||||| ||   |||||| ||||||||||||||||||||| ||||||| | ||||||    
T  1548530 tgcaaaagcccacaacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 1548431  T
Q  836 tcattcca 843  Q
    ||| ||||    
T  1548430 tcagtcca 1548423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 657 - 838
Target Start/End: Original strand, 644745 - 644925
Alignment:
Q  657 ctctcttagttgtgtgcagttctctaccacatgtttcactccct-ctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaatt 755  Q
    |||||| ||||||||||| || || ||||||||||||||||| | |||| ||||||   |||||||||| |||| | ||||||| ||||||||| ||| |    
T  644745 ctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctcc-gtgacaccttcacaaaatttaagtgacagttgcacaagcccgctgcaact 644843  T
Q  756 ctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttca 838  Q
    ||||||||||| ||| |  | |||||| | |||  |||||  ||||||||  ||||||||||| ||||||||| |||||||||    
T  644844 ctttgagatcaaata-aatgatttatcgtaaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttca 644925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 664 - 842
Target Start/End: Complemental strand, 8187269 - 8187091
Alignment:
Q  664 agttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgaga 763  Q
    ||||| |||||||| | ||||||||   |||||||||  |||||||| |||  ||||  ||| ||||| |  ||||||||||| | |||| ||||||| |    
T  8187269 agttgcgtgcagttttttaccacatccatcactcccttccctgtgacgttacgacaattttccagtaacaactgcaaaagcccacaacaactctttgaaa 8187170  T
Q  764 tcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattcc 842  Q
    |  |||| || |||||||||| |||  |||||| ||||||||||||||||||||| |||| || | |||||||||||||    
T  8187169 ttgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcattcc 8187091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 657 - 842
Target Start/End: Complemental strand, 1489546 - 1489361
Alignment:
Q  657 ctctcttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattc 756  Q
    |||||||||||||| ||| || |||| |||||| ||||||||||   |||||||||||  |||   ||| ||||| |||||||||||||| |  |||  |    
T  1489546 ctctcttagttgtgcgcatttttctagcacatgcttcactcccttctctgtgacattaaaacacccttccagtaagagttgcaaaagcccacggcaacac 1489447  T
Q  757 tttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattcc 842  Q
     ||||||| ||| | || ||||  |  ||||| ||||||| ||||||||||||||| || || ||||||||| |||||||||||||    
T  1489446 attgagattacacacagtgtttcgttgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 1489361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 733 - 842
Target Start/End: Complemental strand, 1513516 - 1513407
Alignment:
Q  733 agttgcaaaagcccgctacaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaa 832  Q
    |||||||||||||| | ||||  ||||||||| || ||||| |||| ||||| ||| ||||||  ||||||||||||||| || || ||||||||| |||    
T  1513516 agttgcaaaagcccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaa 1513417  T
Q  833 agttcattcc 842  Q
    ||||||||||    
T  1513416 agttcattcc 1513407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 658 - 815
Target Start/End: Complemental strand, 55908912 - 55908755
Alignment:
Q  658 tctcttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattct 757  Q
    ||||| |||||||||||||| || || ||||||||||| || |   ||||||| | |||||||  ||| || || ||||| |||||||| | ||||||||    
T  55908912 tctctgagttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattct 55908813  T
Q  758 ttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctc 815  Q
    ||||||||| |||||| |||| ||||| |||   ||||| ||||||||| ||||||||    
T  55908812 ttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctc 55908755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 757 - 841
Target Start/End: Complemental strand, 1519227 - 1519143
Alignment:
Q  757 tttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattc 841  Q
    ||||||||||||||||| | ||  |||| |||| |||||| |||||||||||||||||| || ||||||||| ||||||||||||    
T  1519227 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcattc 1519143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 750 - 843
Target Start/End: Original strand, 532196 - 532289
Alignment:
Q  750 acaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattcca 843  Q
    ||||||||||||| ||||||| ||  ||| ||||| ||  ||||||| |||||||||||||||||| || ||||| ||| ||||||||||||||    
T  532196 acaattctttgaggtcacataaagcttttcatcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcattcca 532289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 657 - 843
Target Start/End: Complemental strand, 55505290 - 55505107
Alignment:
Q  657 ctctcttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattc 756  Q
    ||||||||||||||||||||| |||| ||| |||||||||||||   |||||||||   | | |  ||  | ||| |  |||||||| || | |||||||    
T  55505290 ctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat---cgctatttttcaataacaaatgcaaaagtccacgacaattc 55505194  T
Q  757 tttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattcca 843  Q
    |||||| ||||||| || |||  ||| | ||||||||||| |||||||||||||||||| || | ||| |||  |||||||||||||    
T  55505193 tttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagttgggggactctaaagttcattcca 55505107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 664 - 843
Target Start/End: Original strand, 570272 - 570451
Alignment:
Q  664 agttgtgtgcagttctctaccacatgtttcactccctctcct-gtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgag 762  Q
    |||||||||||||| ||||||||||| ||||| || |||  | || |||| || ||||   |||||||| |||||||||||||||| |||| |||||||     
T  570272 agttgtgtgcagttttctaccacatgattcacgcc-tcttttagtaacataataacaatgctcaagtaacagttgcaaaagcccgcgacaactctttgaa 570370  T
Q  763 atcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattcca 843  Q
    |||| ||||||   ||  | || |||   ||||| |||||||||||||||||| || ||| ||||| ||||||||| ||||    
T  570371 atcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctcgagtttgagaacttcaaagttcaatcca 570451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 657 - 838
Target Start/End: Original strand, 553393 - 553574
Alignment:
Q  657 ctctcttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaa-aattcaagtaatagttgcaaaagcccgctacaatt 755  Q
    |||||| |||||||||||||| ||||||||||| |||||||| |   ||||||||| |  |||| ||  |||  || ||||||||||||||   |||| |    
T  553393 ctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgacatcactacaataaaacaa-caacagttgcaaaagcccagaacaact 553491  T
Q  756 ctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttca 838  Q
    |||||| |||||||  || | || ||||| |||  |||||  ||||||||||||||||||||| ||| |||||  ||||||||    
T  553492 ctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaagttca 553574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 750 - 833
Target Start/End: Original strand, 659718 - 659799
Alignment:
Q  750 acaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaa 833  Q
    ||||||| |||||||||||||| |  ||| || ||||||  |||||| |||||||||||||||||| || ||||||||| ||||    
T  659718 acaattccttgagatcacatagtg--tttcattattaacacttgtatgtgacaagttcaacacctctagtttgggaacttcaaa 659799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 663 - 835
Target Start/End: Complemental strand, 1496098 - 1495926
Alignment:
Q  663 tagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgag 762  Q
    ||||||||  |||||||||||||||||  | |||||||   |||||| || || ||||  ||| |||||| |||||||||  || | |||||||||||||    
T  1496098 tagttgtgcacagttctctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgag 1495999  T
Q  763 atcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagt 835  Q
    || ||| |||| |  | ||| ||||| |||||  ||||||| | ||||||||  ||||| |||||| ||||||    
T  1495998 attacaaagagtgcgtcatcgttaacttttgtcattgacaaatccaacaccttgaggttaggaacttcaaagt 1495926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 786 - 842
Target Start/End: Original strand, 1600462 - 1600518
Alignment:
Q  786 aacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattcc 842  Q
    |||| |||||| ||||||||||||||||||||| ||  ||||| |||||||||||||    
T  1600462 aacccttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcc 1600518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 717 - 817
Target Start/End: Complemental strand, 3438690 - 3438591
Alignment:
Q  717 acaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctcc 816  Q
    ||||||||| ||||| |||||||||||||| | |||| |||||||||| |||| |||   |||||||| |||  |||||| ||||||| |||| ||||||    
T  3438690 acaaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatggag-tatttatcatcaactcttgtatgtgacaagctcaatacctcc 3438592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 663 - 814
Target Start/End: Complemental strand, 1517675 - 1517524
Alignment:
Q  663 tagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgag 762  Q
    ||||||||  |||||||||||||||||  | |||||||   ||||||||| || ||||  ||| |||||||||| |||||  || | |||||||||||||    
T  1517675 tagttgtgcacagttctctaccacatgcctaactcccttctctgtgacatcatgacaattttccagtaatagtttcaaaattccacgacaattctttgag 1517576  T
Q  763 atcacatagagagttttatcattaacctttgtatttgacaagttcaacacct 814  Q
    || ||| |||| |  | ||| |||||  ||||  ||||||| ||||||||||    
T  1517575 attacaaagagtgcgtcatcgttaactcttgtcattgacaaattcaacacct 1517524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 798 - 836
Target Start/End: Complemental strand, 21834422 - 21834384
Alignment:
Q  798 tgacaagttcaacacctccaggttgggaactacaaagtt 836  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  21834422 tgacaagtccaacacctccagcttgggaactacaaagtt 21834384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 664 - 843
Target Start/End: Complemental strand, 45245263 - 45245084
Alignment:
Q  664 agttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgaga 763  Q
    ||||||||||| || ||||||||||||||||||||||   ||||||||| || |||   ||  | |||||||||||||||||| | |||| |||||||||    
T  45245263 agttgtgtgcaattttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgaga 45245164  T
Q  764 tcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattcca 843  Q
    |||||| ||| |||| ||||| |||| |||| | |||||| ||||||||||| || || |||||| ||||||| ||||||    
T  45245163 tcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaagtttattcca 45245084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 658 - 815
Target Start/End: Complemental strand, 1037848 - 1037691
Alignment:
Q  658 tctcttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattct 757  Q
    ||||| |||||||||||||| || || ||||||||||| || |   ||||||| | |||||||  ||| || || ||||| |||||||| | ||||||||    
T  1037848 tctctgagttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattct 1037749  T
Q  758 ttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctc 815  Q
    ||||||||| |||||| |||| ||||| |||   ||||| ||||||||| ||||||||    
T  1037748 ttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctc 1037691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 6e-27; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 649 - 843
Target Start/End: Complemental strand, 19468692 - 19468498
Alignment:
Q  649 tatccatgctctcttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgc 748  Q
    |||||||| ||||| ||||||| ||| || |||  ||||||||||||||| |   ||||||||| || ||||   || |  |||| || |||||| || |    
T  19468692 tatccatgttctctcagttgtgagcaattttctttcacatgtttcactcctttctctgtgacatcattacaaccgtccacaaataattccaaaagtccac 19468593  T
Q  749 tacaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattcca 843  Q
     ||| ||||||||||||||||| || |||| ||||| ||||||||||| |||||| |||||||||||||| ||||||||||||||||||| ||||    
T  19468592 aacagttctttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttcactcca 19468498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 670 - 809
Target Start/End: Original strand, 7554415 - 7554554
Alignment:
Q  670 gtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatcacat 769  Q
    |||||||| ||||||||||| |||||||||| | ||||||||||||||||   ||  ||||| ||||| ||||| || | |||| |||||||||||| ||    
T  7554415 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttcagtaacagttgtaaaagtccaccacaactctttgagatcatat 7554514  T
Q  770 agagagttttatcattaacctttgtatttgacaagttcaa 809  Q
    |||| | || ||||| |||  |||||| ||| ||||||||    
T  7554515 agagtgcttcatcatcaacacttgtatatgataagttcaa 7554554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 736 - 833
Target Start/End: Original strand, 9586632 - 9586729
Alignment:
Q  736 tgcaaaagcccgctacaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaa 833  Q
    |||||||| || | ||||||| ||||| ||||||| || |||| ||||||||| | ||||| |||||||||||||||||| || ||||| ||| ||||    
T  9586632 tgcaaaagtccacgacaattcattgaggtcacataaagtgtttcatcattaacatctgtatatgacaagttcaacacctctagcttggggacttcaaa 9586729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 750 - 840
Target Start/End: Original strand, 52082588 - 52082678
Alignment:
Q  750 acaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcatt 840  Q
    |||| |||||||||||||||| |  |||| ||||| ||  ||||| ||||||||||||||||||||||  |||| ||||  ||||||||||    
T  52082588 acaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 52082678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 750 - 824
Target Start/End: Original strand, 9581076 - 9581152
Alignment:
Q  750 acaattctttgagatcacatagagagttttatcattaac--ctttgtatttgacaagttcaacacctccaggttggg 824  Q
    ||||||||||||||||||||| || |||| |||||||||   ||||||  |||||||||||||||||| || |||||    
T  9581076 acaattctttgagatcacataaagcgtttcatcattaacttttttgtacatgacaagttcaacacctctagcttggg 9581152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 750 - 815
Target Start/End: Original strand, 43634914 - 43634979
Alignment:
Q  750 acaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctc 815  Q
    ||||||||||||| ||||||| || |||  ||| | ||||||||||| ||||||||||||| ||||    
T  43634914 acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacgcctc 43634979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 650 - 843
Target Start/End: Complemental strand, 20478274 - 20478081
Alignment:
Q  650 atccatgctctcttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgct 749  Q
    ||||||||||||| |||||||||||||| ||||| ||||||||| |||| |    |||||||||||| |||  ||  |||| || |||||||||||| |     
T  20478274 atccatgctctctcagttgtgtgcagttttctacgacatgtttcgctcctttcattgtgacattatcgcaatttttcagtagtatttgcaaaagcccaca 20478175  T
Q  750 acaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattcca 843  Q
    ||||||| ||||||||||| | |  ||||  |||| ||| ||||||| ||||||||||||||||||||| | ||||| ||||| ||| ||||||    
T  20478174 acaattccttgagatcacagataatgtttcgtcatcaacatttgtatatgacaagttcaacacctccagctggggaattacaacgtttattcca 20478081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 677 - 840
Target Start/End: Complemental strand, 41889719 - 41889556
Alignment:
Q  677 tctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatcacatagagagt 776  Q
    ||||||||||||| ||||||||||    |||||||| || ||||  || |||||| | || | ||||||||| |||| |||||||||||  ||| || ||    
T  41889719 tctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgagatcttataaagtgt 41889620  T
Q  777 tttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcatt 840  Q
    || ||||| ||| ||||||| ||| ||||||||||||||||  |||||||||  ||||||||||    
T  41889619 ttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatt 41889556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 673 - 835
Target Start/End: Complemental strand, 41901704 - 41901542
Alignment:
Q  673 cagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatcacataga 772  Q
    ||||| ||||||||||| ||||||||||    |||||||| || ||||  || |||| | | || |||||| || | |||| |||||||||||| ||| |    
T  41901704 cagttttctaccacatgcttcactcccttctttgtgacatcattacaatcttgaagtgacaatttcaaaagtccacaacaactctttgagatcatataaa 41901605  T
Q  773 gagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagt 835  Q
    | | || ||||| ||| ||||||| ||||||||||||||||||||| ||||||||| ||||||    
T  41901604 gtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 733 - 835
Target Start/End: Original strand, 37937877 - 37937979
Alignment:
Q  733 agttgcaaaagcccgctacaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaa 832  Q
    |||||||||||||| | |||  |||||||||| |||||||| |||| ||||| ||   |||||| || ||||| ||||||||| |||||||||||| |||    
T  37937877 agttgcaaaagcccacgacacatctttgagattacatagagtgtttgatcatcaattcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaa 37937976  T
Q  833 agt 835  Q
    |||    
T  37937977 agt 37937979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 664 - 840
Target Start/End: Original strand, 32267396 - 32267572
Alignment:
Q  664 agttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgaga 763  Q
    ||||| |||||||| ||||| ||||| ||||||||||    ||||| || || ||||  || |||| | | || ||||||||| | |||| |||||||||    
T  32267396 agttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaatttttaagtgacaatttcaaaagcccacaacaactctttgaga 32267495  T
Q  764 tcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcatt 840  Q
    ||| ||| || | || ||||| |||  |||| | |||||||||||| |||||||  ||||||||| |||||||||||    
T  32267496 tcatataaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttcatt 32267572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 755 - 836
Target Start/End: Complemental strand, 38267643 - 38267562
Alignment:
Q  755 tctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagtt 836  Q
    |||||||||| |||||||| || | ||||| |||  |||||| || ||||| ||||||||| |||||||||||| |||||||    
T  38267643 tctttgagattacatagagtgtgtcatcatcaactcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaaagtt 38267562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 733 - 843
Target Start/End: Complemental strand, 18315382 - 18315272
Alignment:
Q  733 agttgcaaaagcccgctacaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaa 832  Q
    |||||||||||||  | |||| ||||||||||||||||||| | || ||||| ||| ||||||| ||||||||||||||||||||| |||||||||  ||    
T  18315382 agttgcaaaagcctacgacaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaa 18315283  T
Q  833 agttcattcca 843  Q
    |||||||||||    
T  18315282 agttcattcca 18315272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 664 - 840
Target Start/End: Original strand, 27922429 - 27922605
Alignment:
Q  664 agttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgaga 763  Q
    ||||| |||||||| ||||||||||| ||||||||||    ||||| || || ||||  ||||||| | | || ||||||||| | |||| |||||||||    
T  27922429 agttgagtgcagttttctaccacatggttcactcccttctttgtgaaatcattacaattttcaagtgacaatttcaaaagcccacaacaactctttgaga 27922528  T
Q  764 tcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcatt 840  Q
    ||| ||| || | || ||||| ||| ||||||| ||||||||||||||||||||  ||||||||| |||||||||||    
T  27922529 tcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttcatt 27922605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 733 - 843
Target Start/End: Original strand, 32151291 - 32151401
Alignment:
Q  733 agttgcaaaagcccgctacaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaa 832  Q
    |||||||||||||| |||||| ||||||||||||||||||| |||| ||||| || | |||||  ||||||||| ||||||||||| |||| |||| | |    
T  32151291 agttgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattggaaacttcga 32151390  T
Q  833 agttcattcca 843  Q
    |||||||||||    
T  32151391 agttcattcca 32151401  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 657 - 838
Target Start/End: Complemental strand, 28246478 - 28246299
Alignment:
Q  657 ctctcttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattc 756  Q
    |||||| ||||||||||| || || ||||||||  ||||||  |   ||||||||   |||||||||| |||| | ||||||||||||||||||||| ||    
T  28246478 ctctctcagttgtgtgcatttttcaaccacatgcgtcactcatttgtctgtgacaccttcacaaaatttaagtgacagttgcaaaagcccgctacaactc 28246379  T
Q  757 tttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttca 838  Q
    |||||||||  |||||| | |||||  | |||  |||||  |||||||| |||||||||||| ||||||||| |||||||||    
T  28246378 tttgagatccaatagagtgatttat--tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 28246299  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 726 - 841
Target Start/End: Complemental strand, 34936279 - 34936164
Alignment:
Q  726 aagtaatagttgcaaaagcccgctacaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttggga 825  Q
    ||||||||||||||||||||| | |||| |||||| |||  ||||||| |||||||||| |||  |||||| |||||||| ||||||||| || || |||    
T  34936279 aagtaatagttgcaaaagcccacgacaactctttgcgatggcatagagtgttttatcatcaactcttgtatatgacaagtccaacacctctagttttgga 34936180  T
Q  826 actacaaagttcattc 841  Q
    ||  ||||| ||||||    
T  34936179 acatcaaagatcattc 34936164  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 667 - 817
Target Start/End: Complemental strand, 17628189 - 17628039
Alignment:
Q  667 tgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatca 766  Q
    ||||||||||| |  | |||||| ||||||||||   ||||||||   | ||||||||| |||||||||| ||| |||||   |||||||||||||||||    
T  17628189 tgtgtgcagtttttcaacacatgcttcactcccttgtctgtgacacctttacaaaattctagtaatagtttcaagagcccaaaacaattctttgagatca 17628090  T
Q  767 catagagagttttatcattaacctttgtatttgacaagttcaacacctcca 817  Q
    ||  ||| | |||||||| |||  | |||| ||||||||||||||||||||    
T  17628089 cacggagtgctttatcatcaactctagtatgtgacaagttcaacacctcca 17628039  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 664 - 843
Target Start/End: Original strand, 21235479 - 21235658
Alignment:
Q  664 agttgtgtgcagttctctaccacatgtttcactccctctcct-gtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgag 762  Q
    |||||||||||||| ||||||||||| ||||| || |||  | ||||||| || ||||   |||||||| ||||||||||||| || |||  |||||||     
T  21235479 agttgtgtgcagttttctaccacatgattcacgcc-tcttttagtgacataataacaatgctcaagtaacagttgcaaaagcctgcgacagctctttgaa 21235577  T
Q  763 atcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcattcca 843  Q
    |||| ||||||   ||  | || |||   ||||| ||||||||||||||||||||| ||||||||| ||||||||| ||||    
T  21235578 atcaaatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactcca 21235658  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 798 - 841
Target Start/End: Complemental strand, 17636445 - 17636402
Alignment:
Q  798 tgacaagttcaacacctccaggttgggaactacaaagttcattc 841  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||    
T  17636445 tgacaagttcaacacctccaatttgggaacttcaaagttcattc 17636402  T

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Target: scaffold0041 (Bit Score: 51; Significance: 9e-20; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 657 - 815
Target Start/End: Original strand, 39098 - 39256
Alignment:
Q  657 ctctcttagttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattc 756  Q
    |||||| ||||| |||||||| | ||||||||||||||||||||    |||||||  |  |||   ||| ||||  || ||||||||||| |||||| ||    
T  39098 ctctctcagttgcgtgcagttgtttaccacatgtttcactcccttcattgtgacacgagaacatttttccagtatcaggtgcaaaagcccactacaactc 39197  T
Q  757 tttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctc 815  Q
    |||||||||||||| || |||| ||||||||||||||||  || |||||||||||||||    
T  39198 tttgagatcacataaagtgtttcatcattaacctttgtaaatgtcaagttcaacacctc 39256  T

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Target: scaffold0807 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 750 - 840
Target Start/End: Complemental strand, 1559 - 1466
Alignment:
Q  750 acaattctttgagatcacatagagagttttatcatta---acctttgtatttgacaagttcaacacctccaggttgggaactacaaagttcatt 840  Q
    |||||||||||||||||||||||| |||| ||||| |   || |||||||||||||||| ||||||||| || || ||||||||||||||||||    
T  1559 acaattctttgagatcacatagagtgtttcatcatcatcaacatttgtatttgacaagtccaacacctctagcttaggaactacaaagttcatt 1466  T

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Target: scaffold0295 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 664 - 815
Target Start/End: Complemental strand, 802 - 651
Alignment:
Q  664 agttgtgtgcagttctctaccacatgtttcactccctctcctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgaga 763  Q
    |||||||||||||| ||||| ||||||||||| || |   || |||| | |||||||  ||| ||||| ||||| || ||||| | ||||||||| ||||    
T  802 agttgtgtgcagttttctactacatgtttcacaccattctctatgacttcatcacaattttccagtaacagttgtaatagcccacaacaattcttcgaga 703  T
Q  764 tcacatagagagttttatcattaacctttgtatttgacaagttcaacacctc 815  Q
    ||| |||||| |||| |||||  ||  |||||| ||||||||| ||||||||    
T  702 tcatatagagtgtttcatcatcgacacttgtatgtgacaagttaaacacctc 651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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