View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12070_low_2 (Length: 803)
Name: NF12070_low_2
Description: NF12070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12070_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 259 - 789
Target Start/End: Original strand, 4953032 - 4953571
Alignment:
| Q |
259 |
ccgagctaattccaacctactttgtttgtctataaatatgccgaaactgaatttgtcactatatcctaaaacggtataatatcaatgttatattgacgca |
358 |
Q |
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| T |
4953032 |
ccgagctaattccaacctactttgtttgtctataaatatgccgaaactgaatttgtcactatatcctaaaacggtataatatcaatgttaaattgacgca |
4953131 |
T |
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| Q |
359 |
tcctaaagtgagagtataccttaaaggagttccat-attttttctaaaacaaaaaacggtataagaaaatttcagcactgcaaatttgacatgttggttc |
457 |
Q |
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| T |
4953132 |
tcctaaagtgagagtataccttaaaggagttccataattttttctaaaa-aaaaaacggtataagaaaatttcagcactacaaatttgacatgttggttc |
4953230 |
T |
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| Q |
458 |
ttgtatgcaccgtcaactttctgtccgccatat-tcatgtt---------ttccatcaaatggttaagtcaacaaagcagctttagtggcaaaaaggtta |
547 |
Q |
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| T |
4953231 |
ctgtatgcaccgtcaactttctgtccgccatatatcatgttctttagatcttccatcaaatggttaagtcaacaaagcagctttaatggcaaaaaggtta |
4953330 |
T |
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| Q |
548 |
tgaattaaaaaagatgatggagattggacttaacaacttcaacaacgattttccgtccaaaaaataaagaactttgacaacgatttctttcatagtgata |
647 |
Q |
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| T |
4953331 |
cgaattaaaaaagatgatggagattggacttaacaacttcaacaacgattttccgtccaaaaaat-aagaactttgacaacgatttctttcatagt---- |
4953425 |
T |
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| Q |
648 |
agataataatcatttgaactttttgcattacctctttccaaaatctacttctaattaatgt-----caataatttgttattttttaggatttactttggc |
742 |
Q |
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| T |
4953426 |
-gataataatcatttgaactttttgcattacctctttccaaaatctacttctaattaatatcttaacaataatttgttattttttaggatttactttggc |
4953524 |
T |
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| Q |
743 |
aaaaataatatgtttattttcacttaccattatcttttgttgctaat |
789 |
Q |
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| T |
4953525 |
aaaaataatatgtttattttcacttaccattatcttttgttgctaat |
4953571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 4952939 - 4952989
Alignment:
| Q |
24 |
attaaaggccttttgtatcgtgaggcaatgagtttgagtcctcatgtctcc |
74 |
Q |
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| T |
4952939 |
attaaaggccttttgtatcgtgaggccatgagtttgagtcctcatgtctcc |
4952989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 253
Target Start/End: Original strand, 30349904 - 30350007
Alignment:
| Q |
145 |
aacaaccgtctataccatataacaatttgtatctagttatgaaaacacttatatatatacacacatgttatgaatattttgcaccctctaaaaagttagt |
244 |
Q |
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| T |
30349904 |
aacaaccatctaccccatattacaatttgtatttacacatgaaaacacttacatatatatac----gttatgaatatttggcaccc-ctaaaaaattagt |
30349998 |
T |
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| Q |
245 |
caagatcca |
253 |
Q |
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| T |
30349999 |
caagatcca |
30350007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 27099411 - 27099347
Alignment:
| Q |
139 |
aagcacaacaaccgtctataccatataacaatttgtatctagttatgaaaacacttatatatata |
203 |
Q |
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| T |
27099411 |
aagcacaacaaccatctacctcatattacaatttgtatatactcatgaaaacacttatatatata |
27099347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 252
Target Start/End: Complemental strand, 7098312 - 7098173
Alignment:
| Q |
110 |
attcaaaccattgaccttgaa-cagtaattaagcacaacaaccgtctataccatataacaatttgtatctagttatgaaaacacttatatatatacacac |
208 |
Q |
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| T |
7098312 |
attcgaaccattgaccctaaagcaataaataagcacagcaatcatcttcaccagataacaatttgtatttgctcatgaaaacgtttatatatatagaa-- |
7098215 |
T |
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| Q |
209 |
atgttatgaatattttgcaccctctaaaaagttagtcaagatcc |
252 |
Q |
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| T |
7098214 |
--gttatgaatatttggcaccccctaaaaaattagtcaagatcc |
7098173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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