View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12070_low_3 (Length: 453)
Name: NF12070_low_3
Description: NF12070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12070_low_3 |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Complemental strand, 1332428 - 1331993
Alignment:
| Q |
18 |
caaataagaaacacaagttaccttttccaatagaactgattatgatggcatataggaatcggcatatgagaaacacgaagccgtcagatcctgtaagcag |
117 |
Q |
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| T |
1332428 |
caaataagaaacacaggttaccttttccaatagaactgattacgatggcatataggaatcggcatatgagaaacacgaagccgtcagatcctgtaagcag |
1332329 |
T |
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| Q |
118 |
agacataatcgtttccgtaaatctgtacatctttgaagggattgagagcaattaaaattggcccaactttaatctgcatacagaaaacgcacaagcagca |
217 |
Q |
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| T |
1332328 |
agacataatcgtttccgtaaatctgtacatctttgaagggattgagagcaattaaaattggcccaactttactctgcatacagaaaacgcacaagcagca |
1332229 |
T |
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| Q |
218 |
tatgagaatacatagataatcatctgtgtaaaacaacaaaccatagcagcggacatacataaatcatatcttgagaatatctaacccgaagattgtgaag |
317 |
Q |
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| T |
1332228 |
tatgagaatacatagataatcatctgcgtaaaacaacaaaccatagcagcggacatacataaatcatatcttgagaatatctaaaccgaagattgtgaag |
1332129 |
T |
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| Q |
318 |
aactgagggctcgttcaaatagctgagctgtctgtataagatcatccacacactctaaaatatcaggattagctggcaagagatctgttcgtgccactct |
417 |
Q |
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| T |
1332128 |
aactgagggctcgttcaaatagctgagctgtctgtataagatcatccacacactctaaaatatcaggattagctggcaagagatctgtttgtgccactct |
1332029 |
T |
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| Q |
418 |
cataacctgcagcaacgacttatcaacataaatagc |
453 |
Q |
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| T |
1332028 |
cataacctgcagcaacaacttatcaacataaatagc |
1331993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 106 - 453
Target Start/End: Complemental strand, 33970837 - 33970494
Alignment:
| Q |
106 |
tcctgtaagcagagacataatcgtttccgtaaatctgtacatctttgaagggattgagagcaattaaaattggcccaactttaatctgcatacagaaaac |
205 |
Q |
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| T |
33970837 |
tcctgtaagcagagacataatcatttccgtaaatctgtacatctttgaagggattgagagcaattaaaattggcccagctttactctgcatacagaaaac |
33970738 |
T |
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| Q |
206 |
gcacaagcagcatatgagaatacatagataatcatctgtgtaaaacaacaaaccatagcagcggacatacataaatcatatcttgagaatatctaacccg |
305 |
Q |
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| T |
33970737 |
gcacaagcagcatatgagaatacatagataatcatctgagtaaaacaacaaaccatagcagcggacatacataaatcatatcttgagaatatctacaccg |
33970638 |
T |
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| Q |
306 |
aagattgtgaagaactgagggctcgttcaaatagctgagctgtctgtataagatcatccacacactctaaaatatcaggattagctggcaagagatctgt |
405 |
Q |
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| T |
33970637 |
aagattgtgaagaaccgagggctcgttcaaatagctgag----ctgtataagatcatccacgccctctaaaatatcaggattagctggcaagagatctgt |
33970542 |
T |
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| Q |
406 |
tcgtgccactctcataacctgcagcaacgacttatcaacataaatagc |
453 |
Q |
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| T |
33970541 |
tcgtgccactttcataacctgcagcaacaactcatcaacacaaatagc |
33970494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 33972098 - 33972010
Alignment:
| Q |
18 |
caaataagaaacacaagttaccttttccaatagaactgattatgatggcatataggaatcggcatatgagaaacacgaagccgtcagatc |
107 |
Q |
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| T |
33972098 |
caaataagaa-cacaagttaccttttccaatagaactgtttatgatggcatatgggaatcggcatatgagaaacacgaagccgtcagatc |
33972010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 22791074 - 22791006
Alignment:
| Q |
270 |
acatacataaatcatatcttgagaatatctaacccgaagattgtgaagaactgagggctcgttcaaata |
338 |
Q |
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| T |
22791074 |
acatacataaatcatctcccgagaatatctaaacctaagattgtgaagaaccgatggctcattcaaata |
22791006 |
T |
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