View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12070_low_6 (Length: 257)
Name: NF12070_low_6
Description: NF12070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12070_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 1331865 - 1331622
Alignment:
| Q |
1 |
ccccacttccctcttggttgcttacaccaaacatgaaggaagtttctgtggnnnnnnnnnnnnnnnnnnggaaatttaacagataacttcaaataaatat |
100 |
Q |
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| T |
1331865 |
ccccacttccctcttggttgcttacaccaaacatgaaggaagtttctgtggaaaaaccaaaaacaaaaaggaaatttaacagataacttcaaataaatat |
1331766 |
T |
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| Q |
101 |
attcaaaagagttttaaactttagagtttgatagatatacaatgatatagcataaataatttttacaatgagaaaaacatgagaaaacatgacttgatcc |
200 |
Q |
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| T |
1331765 |
attcaaaagagttttaaactttagagtttgatagatatacaatgatatagcataaataatttttacaatgagaaaaacatgagaaaacatgacttgatcc |
1331666 |
T |
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| Q |
201 |
tagaggattcggcctttaggaaacaagatttgaccctctctgtg |
244 |
Q |
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| T |
1331665 |
tagaggattccgcctttaggaaacaagatttgaccctctctgtg |
1331622 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 33970371 - 33970334
Alignment:
| Q |
1 |
ccccacttccctcttggttgcttacaccaaacatgaag |
38 |
Q |
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| T |
33970371 |
ccccacttccctcttggttgcctacaccaaacatgaag |
33970334 |
T |
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