View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12071_high_12 (Length: 477)

Name: NF12071_high_12
Description: NF12071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12071_high_12
NF12071_high_12
[»] chr1 (2 HSPs)
chr1 (77-272)||(47649145-47649340)
chr1 (271-462)||(47649437-47649631)
[»] chr2 (1 HSPs)
chr2 (17-132)||(36518168-36518283)
[»] scaffold0031 (2 HSPs)
scaffold0031 (271-462)||(91601-91795)
scaffold0031 (149-272)||(91407-91528)
[»] chr5 (1 HSPs)
chr5 (96-228)||(30753272-30753404)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 6e-66; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 77 - 272
Target Start/End: Original strand, 47649145 - 47649340
Alignment:
Q  77 acaaatgcattaaaccatgtctccaccaatccatctcaactcgaaataaaatttggacaaaattgtatgctaaaagtaaagaaaaattacttacaatttc 176  Q
    |||||||||| ||  | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  47649145 acaaatgcatcaagtcgtgtctccacgaatccatctcaactcgaaataaaatttggacaaaattgtatgctaaatgtcaagaaaaattacttacaatttc 47649244  T
Q  177 tctcaagtcgtgttattatccttatgaacaagttcatacattatattaagtgcactagaaaattgtccaccgataccctataaaaatattcaaaat 272  Q
    ||| |||| |||||||||||||| ||| || | ||  |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  47649245 tctgaagtggtgttattatccttgtgagcacgctcggacattatattaagtgcactacaaaattgtccaccgataccctatagaaatattcaaaat 47649340  T

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Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 271 - 462
Target Start/End: Original strand, 47649437 - 47649631
Alignment:
Q  271 atttatatacttacttggaaattcatcatttgactaaatat---------tttttcctcaacttgtttctccatcttttctcctagttgcctttgactct 361  Q
    |||||||||||||||| ||||||||||||||||||||| ||         ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47649437 atttatatacttacttagaaattcatcatttgactaaacatatttgccattttttcctcaacttgtttctccatcttttctcctagttgccttagactct 47649536  T
Q  362 cttcaaataacatatttgccgtcatttcttccctcatgtttctctccttttcgagttgagtctctacgtcttttaacttcatctctataccttgtctttt 461  Q
    ||||||||      |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  47649537 cttcaaat------tttgccgtcatttcttccctcatgtttcgctccttttcgagttgagtctctacttcttttaacttcatctctaaaccttgtctttt 47649630  T

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Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 36518283 - 36518168
Alignment:
Q  17 cagagaacatgaaacaccagtaagtttggattattaaccaatcgcaaaaacgaattctcaacaaatgcattaaaccatgtctccaccaatccatctcaac 116  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36518283 cagaaaacatgaaacaccagtaagtttggattattaaccaattgcaaaaacgaattctcaacaaatgcattaaaccatgtctccaccaatccatctcaac 36518184  T
Q  117 tcgaaataaaatttgg 132  Q
    || |||||||||||||    
T  36518183 tccaaataaaatttgg 36518168  T

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Target: scaffold0031 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 271 - 462
Target Start/End: Original strand, 91601 - 91795
Alignment:
Q  271 atttatatacttacttggaaattcatcatttgactaaatat---------tttttcctcaacttgtttctccatcttttctcctagttgcctttgactct 361  Q
    |||||||||||||||| ||||||||||||||||||||| ||         |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  91601 atttatatacttactttgaaattcatcatttgactaaacatatttgccattttttcctcaacttgtttctccatcttttcccctagttgcctttgactct 91700  T
Q  362 cttcaaataacatatttgccgtcatttcttccctcatgtttctctccttttcgagttgagtctctacgtcttttaacttcatctctataccttgtctttt 461  Q
    ||||||||      |||||||||||||||||||||||||||| ||| ||| ||||||||||||| || ||||||||||||||||||| | |||| |||||    
T  91701 cttcaaat------tttgccgtcatttcttccctcatgtttcgctcttttccgagttgagtctcaacttcttttaacttcatctctaaatcttgactttt 91794  T

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Target: scaffold0031; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 149 - 272
Target Start/End: Original strand, 91407 - 91528
Alignment:
Q  149 aaagtaaagaaaaattacttacaatttctctcaagtcgtgttattatccttatgaacaagttcatacattatattaagtgcactagaaaattgtccaccg 248  Q
    ||||| |||||||||| ||||||||||||    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  91407 aaagtcaagaaaaattgcttacaatttctgg--agtcatgttattatccttgtgaacaagttcatacattatattaagtgcactagaaaattgtccaccg 91504  T
Q  249 ataccctataaaaatattcaaaat 272  Q
    ||||||||||||||||||||||||    
T  91505 ataccctataaaaatattcaaaat 91528  T

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Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 96 - 228
Target Start/End: Original strand, 30753272 - 30753404
Alignment:
Q  96 tctccaccaatccatctcaactcgaaataaaatttggacaaaattgtatgctaaaagtaaagaaaaattacttacaatttctctcaagtcgtgttattat 195  Q
    |||||| ||| ||||||||| || ||||||||||| ||||||||||||| |||||||| |||||||||||||| |||||||||| |||||||||||||||    
T  30753272 tctccatcaagccatctcaattcaaaataaaatttagacaaaattgtattctaaaagtcaagaaaaattacttccaatttctctgaagtcgtgttattat 30753371  T
Q  196 ccttatgaacaagttcatacattatattaagtg 228  Q
    ||||||||||||||||| ||||||| |||||||    
T  30753372 ccttatgaacaagttcagacattatcttaagtg 30753404  T

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