View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12071_high_14 (Length: 421)
Name: NF12071_high_14
Description: NF12071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12071_high_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 7570832 - 7570947
Alignment:
| Q |
21 |
taatagctggtatggttggagggttgcttggtctaggaggtggcttcattttggggccactctttctagaaatgggaatccctccacaggtacatttatc |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| || |
|
|
| T |
7570832 |
taatagctggtatggttggagggttgcttggtctaggaggtggcttcattttggggccactctttctagaaatgggaattcctccgcaggtacattcttc |
7570931 |
T |
|
| Q |
121 |
ataattcttgtgtgtt |
136 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
7570932 |
gtaattcttgtgtgtt |
7570947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 382
Target Start/End: Original strand, 7571084 - 7571169
Alignment:
| Q |
299 |
aaatattttgtgaa-actaaatttagagaattttaaataccacct-aaaattcagaatttaaagtttcttccttacactttaaaat |
382 |
Q |
| |
|
||||||||||| || ||||| ||||| | |||||||||||||||| |||||| ||||||| || ||||||| |||| || |||||| |
|
|
| T |
7571084 |
aaatattttgtcaacactaattttaggggattttaaataccacctaaaaattaagaatttgaaatttcttctttactctataaaat |
7571169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 33124190 - 33124094
Alignment:
| Q |
18 |
gaataatagctggtatggttggagggttgcttggtctaggaggtggcttcattttggggccactctttctagaaatgggaatccctccacaggtaca |
114 |
Q |
| |
|
|||||||||||||||||||| | || |||||||||||||| ||||||||||||||||| ||| | ||| | ||| ||||||| ||||| |||||||| |
|
|
| T |
33124190 |
gaataatagctggtatggttagtggtttgcttggtctaggtggtggcttcattttgggaccattgtttttggaattgggaattcctcctcaggtaca |
33124094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 372
Target Start/End: Complemental strand, 43401572 - 43401511
Alignment:
| Q |
311 |
aaactaaatttagagaattttaaataccacctaaaattcagaatttaaagtttcttccttac |
372 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| |||||||||| |||||| |||| |
|
|
| T |
43401572 |
aaactaaatttggagaatttcaaataccacctaaaattaagaatttaaaacttcttctttac |
43401511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University