View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12071_high_18 (Length: 365)
Name: NF12071_high_18
Description: NF12071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12071_high_18 |
 | |
|
| [»] scaffold0200 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 41972852 - 41972499
Alignment:
| Q |
1 |
ttaatcttcggatatgatcttggcatttcaggtacaatattctcattttccaattaagtgtttgacaaaatatgtctcaagaattgttcatatgacaata |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41972852 |
ttaatcttcggctatgatcttggcatttcaggtacaatattctcattttccattgaagtgtttgacaaaatatgtctcaagaattgttcatatgacaata |
41972753 |
T |
|
| Q |
101 |
attttctgattaattacatgataaacaattaatgtataggtggagttacggcaatggatccattcttgctgaagttctttccagatgtttaggctaagga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41972752 |
attttctgattaattacatgataaacaattaatgtataggtggagttacggcaatggatccattcttgctgaagttctttccagatgtttaggctaagga |
41972653 |
T |
|
| Q |
201 |
gctaaacattaagcctacggataaccattactgcaaattcgacagtcagacactaacgttgtttacatcctctttgtatttggccgctcttgtggcttct |
300 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41972652 |
gctaaacattaagcctacggataatcaatactgcaaattcgacagtcagacact-acgttgtttacatcctctttgtatttggccgctcttgtggattct |
41972554 |
T |
|
| Q |
301 |
cttggagcatccaccgtaactagaatctttggaagacgtcttaccatgctctctg |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41972553 |
cttggagcatccaccgtaactagaatctttggaagacgtcttaccatgctctctg |
41972499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 1241223 - 1240866
Alignment:
| Q |
1 |
ttaatcttcggatatgatcttggcatttcaggtacaatattctcattttccaattaagtgtttgacaaaatatgtctcaagaattgttcatatgacaata |
100 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
1241223 |
ttaatcttcggctatgatcttggcctttcaggtacaatattctcattttccaattaagtgtttgccaaa-tatgtctcaagaattgttcatatgacaata |
1241125 |
T |
|
| Q |
101 |
attttctgattaattacatgataaacaattaatgtataggtggagttacggcaatggatccat----tcttgctgaagttctttccagatgtttaggcta |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1241124 |
attttctgattaattacatgataaacaattaatgtataggtggagttacggcaatggatccatccattcttgctgaagttctttccagatgtttaggcta |
1241025 |
T |
|
| Q |
197 |
aggagctaaacattaagcctacggataaccattactgcaaattcgacagtcagacactaacgttgtttacatcctctttgtatttggccgctcttgtggc |
296 |
Q |
| |
|
|||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1241024 |
aggagctaaacattaagcctaccgataatcaatactgcaaattcgacagtcagacactaacgttgtttacatcctctttgtatttggccgctcttgtggc |
1240925 |
T |
|
| Q |
297 |
ttctcttggagcatccaccgtaactagaatctttggaagacgtcttaccatgctctctg |
355 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1240924 |
ttctcttggagcatccaccgcaactagaatctttggaagacatcttaccatgctctctg |
1240866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 42519455 - 42519087
Alignment:
| Q |
1 |
ttaatcttcggatatgatcttggcatttcaggtacaatattctca--------------ttttccaattaagtgtttgacaaaatatgtctcaagaattg |
86 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42519455 |
ttaatctttggttatgatcttggcatttcaggtacaatattctaatttattttcttcttttttccatttaagtgtttgacaaaatatgtctcaagaattg |
42519356 |
T |
|
| Q |
87 |
ttcatatgacaataattttctgattaattacatgataaacaattaatgtataggtggagttacggcaatggatccattcttgctgaagttctttccagat |
186 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42519355 |
ttcatgtgacaataattttctgattaatgacatgataatgaattaatgtataggtggagttacggcaatggatccattcttaatgaagttctttccagat |
42519256 |
T |
|
| Q |
187 |
gtttaggctaaggagctaaacattaagcctacggataaccattactgcaaattcgacagtcagacactaacgttgtttacatcctctttgtatttggccg |
286 |
Q |
| |
|
||||| |||||| ||||||||||||||||| | ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42519255 |
gtttatgctaagcagctaaacattaagcctgcagataatcaatactgcaaattcgacagtcagacactaactctgtttacatcctctttgtatttggccg |
42519156 |
T |
|
| Q |
287 |
ctcttgtggcttctcttggagcatccaccgtaactagaatctttggaagacgtcttaccatgctctctg |
355 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42519155 |
ctcttgtggcttctcttggagcatccactgtaactagaatctttggaagacgtcttaccatgctctctg |
42519087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 223 - 348
Target Start/End: Original strand, 42550866 - 42550991
Alignment:
| Q |
223 |
aaccattactgcaaattcgacagtcagacactaacgttgtttacatcctctttgtatttggccgctcttgtggcttctcttggagcatccaccgtaacta |
322 |
Q |
| |
|
||||| ||||||| |||||| || || || |||| |||||||| ||||||||||||||||| |||||||| || || ||||| |||||||| |||||| |
|
|
| T |
42550866 |
aaccagtactgcagattcgatagccaaacgttaacattgtttacctcctctttgtatttggctgctcttgtagcatcacttggggcatccacagtaactc |
42550965 |
T |
|
| Q |
323 |
gaatctttggaagacgtcttaccatg |
348 |
Q |
| |
|
|| |||||||| ||||| |||||| |
|
|
| T |
42550966 |
gatcgtttggaaggcgtctcaccatg |
42550991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 160 - 1
Alignment:
| Q |
1 |
ttaatcttcggatatgatcttggcatttcaggtacaatattctcattttccaattaagtgtttgacaaaatatgtctcaagaattgttcatatgacaata |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
160 |
ttaatcttcggctatgatcttggcatttcaggtacaatattctcattttccattgaagtgtttgacaaaatatgtctcaagaattgttcatatgacaata |
61 |
T |
|
| Q |
101 |
attttctgattaattacatgataaacaattaatgtataggtggagttacggcaatggatc |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
60 |
attttctgattaattacatgataaacaattaatgtataggtggagttacggcaatggatc |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University