View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12071_high_31 (Length: 239)

Name: NF12071_high_31
Description: NF12071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12071_high_31
NF12071_high_31
[»] chr1 (2 HSPs)
chr1 (50-147)||(10780032-10780129)
chr1 (157-215)||(13489256-13489314)
[»] chr5 (2 HSPs)
chr5 (154-223)||(29966006-29966078)
chr5 (154-223)||(30008720-30008792)
[»] chr3 (1 HSPs)
chr3 (150-215)||(6776778-6776843)


Alignment Details
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 10780032 - 10780129
Alignment:
Q  50 gtgagaatgttttaatagattggaggcctcctatggagggttgggttaagttgaatagagatgactcttataatgataatgggaaaggagggtgtggt 147  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| |||||||||||| ||| | ||||||||    
T  10780032 gtgagaatgttttaatagattggaggcctcctatggagggttggattaagttgaatacaaatgactcttaaaatgataatggggaagcaaggtgtggt 10780129  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 13489256 - 13489314
Alignment:
Q  157 tttggattctctccggtcacatgagagtccagtgtaatcttatccattaaaaattaatg 215  Q
    |||||| ||||||||||||||||||||||||||| |||| ||||||||| |||| ||||    
T  13489256 tttggactctctccggtcacatgagagtccagtgaaatcatatccattacaaatgaatg 13489314  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 29966006 - 29966078
Alignment:
Q  154 gggtttggattctctccggt---cacatgagagtccagtgtaatcttatccattaaaaattaatgtatatgag 223  Q
    ||||||||| ||||||||||   |||| |||||||||||| |||||| |||||||||||||||||||||||||    
T  29966006 gggtttggaatctctccggtggtcacacgagagtccagtgaaatcttgtccattaaaaattaatgtatatgag 29966078  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 30008792 - 30008720
Alignment:
Q  154 gggtttggattctctccggt---cacatgagagtccagtgtaatcttatccattaaaaattaatgtatatgag 223  Q
    ||||||||| ||||||||||   |||| |||||||||||| |||||| |||||||||||||||||||||||||    
T  30008792 gggtttggaatctctccggtggtcacacgagagtccagtgaaatcttgtccattaaaaattaatgtatatgag 30008720  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 6776778 - 6776843
Alignment:
Q  150 tgtggggtttggattctctccggtcacatgagagtccagtgtaatcttatccattaaaaattaatg 215  Q
    ||||||||||| || |||| | || ||||||| ||| |||| |||| |||||||||||||||||||    
T  6776778 tgtggggtttgaatcctcttcagtgacatgagtgtctagtgaaatcctatccattaaaaattaatg 6776843  T

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