View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12071_high_33 (Length: 235)
Name: NF12071_high_33
Description: NF12071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12071_high_33 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 26949529 - 26949312
Alignment:
| Q |
1 |
tgatagaaaaaagattgataaacatcaaaaaccatttgacattttgagagataaaaagataatgcagagtaatgtaatatgttattgatgtgatagaaag |
100 |
Q |
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| T |
26949529 |
tgatagaaaaaagattgataaacatcaaaaaccatttgacattttgagagataaaaagataatgtagagtaatgtaatatgttgttgatgtgatagaaag |
26949430 |
T |
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| Q |
101 |
agaaatatataaagagagaataatatgttgaataagtgtataaaatttaggggtgtttaatat-ttttgtcttataaagatagtgatgatctcgattagt |
199 |
Q |
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| T |
26949429 |
agatatatataaagagagaataatatgttgaataagtgtataaaatttaggggtgtttaatattttttgtcttataaagatagtgatgatctcaattagt |
26949330 |
T |
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| Q |
200 |
tggatctaaagatactat |
217 |
Q |
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|||||||||||||||||| |
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| T |
26949329 |
tggatctaaagatactat |
26949312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 36424704 - 36424744
Alignment:
| Q |
109 |
ataaagagagaataatatgttgaataagtgtataaaattta |
149 |
Q |
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||||||||| ||||| ||||| ||||||||||||||||||| |
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| T |
36424704 |
ataaagagaaaataaaatgttaaataagtgtataaaattta |
36424744 |
T |
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