View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12071_low_11 (Length: 485)
Name: NF12071_low_11
Description: NF12071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12071_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 275 - 476
Target Start/End: Original strand, 10809156 - 10809357
Alignment:
| Q |
275 |
aaaatgttacatgtatttgatccaaatttagaccaatacacttgacattttgttaatttttcagatctgaaatagtatatttcttttgactcggtaaatt |
374 |
Q |
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| T |
10809156 |
aaaatgttacatgtatttgatccaaatttagaccaatacacttgacattttgttaatttttcagatctgaaatagtatatttcttttgactcggtaaatt |
10809255 |
T |
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| Q |
375 |
gagtatgtgcaatataaacaacaccaaaatggattacaattatctcattttcagcttcactatcactcgtactagcatcaaccatgtctcgtcccacctc |
474 |
Q |
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| T |
10809256 |
gagtatgtgcaatataaacaacaccaaaatggattacaattatctcattttcagcttcactatcactcgacctagcatcaaccatgtctcgtcccacctc |
10809355 |
T |
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| Q |
475 |
at |
476 |
Q |
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|| |
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| T |
10809356 |
at |
10809357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 10808924 - 10809156
Alignment:
| Q |
16 |
caattatatgatattgggacacaagagaatcaatcacaacgccctctccaacnnnnnnngcaatcacaacgcacatctataacaaataaaacataaatat |
115 |
Q |
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| T |
10808924 |
caattatatgatattgggacacaagagaatcaatcacaacgccctctccaacaaaaaaagcaatcacaacgcacatctataacaaataaaacataaatat |
10809023 |
T |
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| Q |
116 |
gttatttgtcgcgaaaaataacctcacaaaggcatcacgagtaacatactaagtttaaagtaaatcttcttaattcaagaagtattcatgcatgatacct |
215 |
Q |
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|||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
10809024 |
gttatttgtcgcaaaaaataacctcacgaaggcatcaccagtaacatactaagtttaaagcaaatcttcttaattcaagtagtattcatgcatgatacct |
10809123 |
T |
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| Q |
216 |
tgatgaacatctttgatctaagttttaagccaa |
248 |
Q |
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| T |
10809124 |
tgatgaacatctttgatctaagttttaagccaa |
10809156 |
T |
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