View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12071_low_12 (Length: 477)
Name: NF12071_low_12
Description: NF12071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12071_low_12 |
 | |
|
| [»] scaffold0031 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 128; Significance: 6e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 77 - 272
Target Start/End: Original strand, 47649145 - 47649340
Alignment:
| Q |
77 |
acaaatgcattaaaccatgtctccaccaatccatctcaactcgaaataaaatttggacaaaattgtatgctaaaagtaaagaaaaattacttacaatttc |
176 |
Q |
| |
|
|||||||||| || | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
47649145 |
acaaatgcatcaagtcgtgtctccacgaatccatctcaactcgaaataaaatttggacaaaattgtatgctaaatgtcaagaaaaattacttacaatttc |
47649244 |
T |
|
| Q |
177 |
tctcaagtcgtgttattatccttatgaacaagttcatacattatattaagtgcactagaaaattgtccaccgataccctataaaaatattcaaaat |
272 |
Q |
| |
|
||| |||| |||||||||||||| ||| || | || |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
47649245 |
tctgaagtggtgttattatccttgtgagcacgctcggacattatattaagtgcactacaaaattgtccaccgataccctatagaaatattcaaaat |
47649340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 271 - 462
Target Start/End: Original strand, 47649437 - 47649631
Alignment:
| Q |
271 |
atttatatacttacttggaaattcatcatttgactaaatat---------tttttcctcaacttgtttctccatcttttctcctagttgcctttgactct |
361 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47649437 |
atttatatacttacttagaaattcatcatttgactaaacatatttgccattttttcctcaacttgtttctccatcttttctcctagttgccttagactct |
47649536 |
T |
|
| Q |
362 |
cttcaaataacatatttgccgtcatttcttccctcatgtttctctccttttcgagttgagtctctacgtcttttaacttcatctctataccttgtctttt |
461 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
47649537 |
cttcaaat------tttgccgtcatttcttccctcatgtttcgctccttttcgagttgagtctctacttcttttaacttcatctctaaaccttgtctttt |
47649630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 36518283 - 36518168
Alignment:
| Q |
17 |
cagagaacatgaaacaccagtaagtttggattattaaccaatcgcaaaaacgaattctcaacaaatgcattaaaccatgtctccaccaatccatctcaac |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36518283 |
cagaaaacatgaaacaccagtaagtttggattattaaccaattgcaaaaacgaattctcaacaaatgcattaaaccatgtctccaccaatccatctcaac |
36518184 |
T |
|
| Q |
117 |
tcgaaataaaatttgg |
132 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
36518183 |
tccaaataaaatttgg |
36518168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 271 - 462
Target Start/End: Original strand, 91601 - 91795
Alignment:
| Q |
271 |
atttatatacttacttggaaattcatcatttgactaaatat---------tttttcctcaacttgtttctccatcttttctcctagttgcctttgactct |
361 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
91601 |
atttatatacttactttgaaattcatcatttgactaaacatatttgccattttttcctcaacttgtttctccatcttttcccctagttgcctttgactct |
91700 |
T |
|
| Q |
362 |
cttcaaataacatatttgccgtcatttcttccctcatgtttctctccttttcgagttgagtctctacgtcttttaacttcatctctataccttgtctttt |
461 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||| ||| ||||||||||||| || ||||||||||||||||||| | |||| ||||| |
|
|
| T |
91701 |
cttcaaat------tttgccgtcatttcttccctcatgtttcgctcttttccgagttgagtctcaacttcttttaacttcatctctaaatcttgactttt |
91794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 149 - 272
Target Start/End: Original strand, 91407 - 91528
Alignment:
| Q |
149 |
aaagtaaagaaaaattacttacaatttctctcaagtcgtgttattatccttatgaacaagttcatacattatattaagtgcactagaaaattgtccaccg |
248 |
Q |
| |
|
||||| |||||||||| |||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
91407 |
aaagtcaagaaaaattgcttacaatttctgg--agtcatgttattatccttgtgaacaagttcatacattatattaagtgcactagaaaattgtccaccg |
91504 |
T |
|
| Q |
249 |
ataccctataaaaatattcaaaat |
272 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
91505 |
ataccctataaaaatattcaaaat |
91528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 96 - 228
Target Start/End: Original strand, 30753272 - 30753404
Alignment:
| Q |
96 |
tctccaccaatccatctcaactcgaaataaaatttggacaaaattgtatgctaaaagtaaagaaaaattacttacaatttctctcaagtcgtgttattat |
195 |
Q |
| |
|
|||||| ||| ||||||||| || ||||||||||| ||||||||||||| |||||||| |||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
30753272 |
tctccatcaagccatctcaattcaaaataaaatttagacaaaattgtattctaaaagtcaagaaaaattacttccaatttctctgaagtcgtgttattat |
30753371 |
T |
|
| Q |
196 |
ccttatgaacaagttcatacattatattaagtg |
228 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| |
|
|
| T |
30753372 |
ccttatgaacaagttcagacattatcttaagtg |
30753404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University