View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12071_low_17 (Length: 398)

Name: NF12071_low_17
Description: NF12071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12071_low_17
NF12071_low_17
[»] chr6 (19 HSPs)
chr6 (1-382)||(6416123-6416504)
chr6 (8-147)||(6589119-6589258)
chr6 (1-157)||(6395021-6395177)
chr6 (44-157)||(6426711-6426824)
chr6 (3-154)||(6432320-6432471)
chr6 (208-355)||(6588917-6589064)
chr6 (4-168)||(6410166-6410330)
chr6 (6-157)||(10579523-10579673)
chr6 (3-158)||(19632595-19632750)
chr6 (44-162)||(6423417-6423535)
chr6 (3-72)||(7119316-7119385)
chr6 (3-72)||(7131794-7131863)
chr6 (122-154)||(6596717-6596749)
chr6 (122-162)||(14820968-14821008)
chr6 (43-158)||(6602990-6603105)
chr6 (122-152)||(6585073-6585103)
chr6 (280-354)||(6594189-6594263)
chr6 (125-158)||(6403162-6403195)
chr6 (45-85)||(9411556-9411596)
[»] chr3 (3 HSPs)
chr3 (3-382)||(13470293-13470672)
chr3 (3-188)||(51764195-51764380)
chr3 (264-354)||(51764032-51764122)
[»] chr7 (5 HSPs)
chr7 (3-380)||(10614752-10615129)
chr7 (3-159)||(10169914-10170070)
chr7 (3-159)||(10177439-10177595)
chr7 (123-162)||(15091932-15091971)
chr7 (123-159)||(10167458-10167494)
[»] chr4 (4 HSPs)
chr4 (45-355)||(21833969-21834276)
chr4 (140-344)||(53761381-53761582)
chr4 (47-148)||(547119-547220)
chr4 (45-93)||(1600623-1600671)
[»] chr1 (3 HSPs)
chr1 (3-196)||(19468246-19468439)
chr1 (49-158)||(9581276-9581385)
chr1 (49-147)||(9586844-9586942)
[»] chr5 (5 HSPs)
chr5 (208-355)||(28532075-28532222)
chr5 (3-161)||(28525170-28525328)
chr5 (59-161)||(20477864-20477966)
chr5 (45-119)||(41889375-41889449)
chr5 (45-102)||(41901376-41901433)
[»] chr8 (1 HSPs)
chr8 (45-112)||(18315101-18315168)


Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 6416123 - 6416504
Alignment:
Q  1 ctttaaaacttgacaaataccttcagataagagattacaacgattcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6416123 ctttaaaacttgacaaataccttcagataagagattacaacgattcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttca 6416222  T
Q  101 tcgcttaaccattgattttttcccaaatagagagactttaattgagggtatacaccaaactcgaccaatttttcagaattctctacactcatactcttcc 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6416223 tcgcttaaccatttattttttcccaaatagagagactttaattgagggtatacaccaaactcgaccaatttttcagaattctctacactcatactcttcc 6416322  T
Q  201 ctattccttccattttgatctcgctaagtagaggacagtttctagtgagtgcatacaaagcatattttgtgagcttaaggcaacaactaaggtttatgga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6416323 ctattccttccattttgatctcgctaagtagaggacagtttctagtgagtgcatacaaagcatattttgtgagcttaaggcaacaactaaggtttatgga 6416422  T
Q  301 catcaaaccactaagaaacggagacaattggacaacatgttgatcattaagaaacgaaagttcaagattcaaatgttggatg 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6416423 catcaaaccactaagaaacggagacaattggacaacatgttgatcattaagaaacgaaagttcaagattcaaatgttggatg 6416504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 6589258 - 6589119
Alignment:
Q  8 acttgacaaataccttcagataagagattacaacgattcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttcatcgctta 107  Q
    |||||||||||||||| ||||| |  |||||||  ||| |||||||||| ||  |||||||||||  |||||| |||||||||||||  | |||| ||||    
T  6589258 acttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcactta 6589159  T
Q  108 accattgattttttcccaaatagagagactttaattgagg 147  Q
    |||||  |||||| ||||||||||||||||||||||||||    
T  6589158 accatgaatttttacccaaatagagagactttaattgagg 6589119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 6395021 - 6395177
Alignment:
Q  1 ctttaaaacttgacaaataccttcagataagagattacaacgattcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttca 100  Q
    |||||||||||||||||||||||||||||   |    |||||  |||||||||| ||||| |||||||||||  |||||| ||||||||||||   ||||    
T  6395021 ctttaaaacttgacaaataccttcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaattggggaaaatggaagtaaacattatgattatttca 6395120  T
Q  101 tcgcttaaccattgattttttcccaaatagagagactttaattgagggtatacacca 157  Q
    ||  ||||||| | |||| | |||||||||||||| ||||| |||||||||||||||    
T  6395121 tctattaaccagtaatttgtacccaaatagagagagtttaactgagggtatacacca 6395177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 157
Target Start/End: Original strand, 6426711 - 6426824
Alignment:
Q  44 ttcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttcatcgcttaaccattgattttttcccaaatagagagactttaatt 143  Q
    ||||||||||| ||||| |||||||||||  |||||| | ||||||||||   |||||| |||||||||  |||| | |||| |||||||||||| ||||    
T  6426711 ttcaaatcaagtagctgtaaattggggaaaatggaagcatacattatgatgatttcatcacttaaccatgaatttctacccagatagagagacttcaatt 6426810  T
Q  144 gagggtatacacca 157  Q
    ||||||||||||||    
T  6426811 gagggtatacacca 6426824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 154
Target Start/End: Original strand, 6432320 - 6432471
Alignment:
Q  3 ttaaaacttgacaaataccttcagataagagattacaacgattcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttcatc 102  Q
    |||||||||||||||||||||||  ||   ||| ||| | |  |||||||||  | ||||||||||||||  |||||| |||||||||||| | |||||     
T  6432320 ttaaaacttgacaaataccttcatttatacgatgacaccaacgcaaatcaagatgttgcaaattggggaaaatggaagcaaacattatgatcctttcatt 6432419  T
Q  103 gcttaaccattgattttttcccaaatagagagactttaattgagggtataca 154  Q
     |||||||||  ||| |  |||||||||||||||||||| ||||||||||||    
T  6432420 ccttaaccatgaattgtgacccaaatagagagactttaactgagggtataca 6432471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 208 - 355
Target Start/End: Complemental strand, 6589064 - 6588917
Alignment:
Q  208 ttccattttgatctcgctaagtagaggacagtttctagtgagtgcatacaaagcatattttgtgagcttaaggcaacaactaaggtttatggacatcaaa 307  Q
    ||||||| ||||||| | ||||| |||||| || ||||  |||||| |||||||  ||| ||||| ||||  ||||  ||||||||||| ||||| ||||    
T  6589064 ttccattgtgatctcaccaagtaaaggacacttcctagcaagtgcaaacaaagctgattctgtgatcttactgcaattactaaggtttacggacaccaaa 6588965  T
Q  308 ccactaagaaacggagacaattggacaacatgttgatcattaagaaac 355  Q
     ||| |||||| | |||||||| |||||||||||||||||| ||||||    
T  6588964 tcaccaagaaaggaagacaattcgacaacatgttgatcattcagaaac 6588917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 168
Target Start/End: Original strand, 6410166 - 6410330
Alignment:
Q  4 taaaacttgacaaataccttcagataagagattacaacgattcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttcatcg 103  Q
    ||||||||||||||||||||||||||   | |  ||||   |||||||||| || || |||||||| ||  |||||| |||||  |||||   ||||||     
T  6410166 taaaacttgacaaataccttcagatatttgctggcaacccgtcaaatcaagtagttgtaaattgggaaaaatggaagcaaacaaaatgattatttcatca 6410265  T
Q  104 cttaaccattgattttttcccaaatagagagactttaattgagggtatacaccaaactcgaccaa 168  Q
    |||||| ||  ||| |   |||||||||||||||||||||||||||||||||||||||| |||||    
T  6410266 cttaacgatgtattgtaatccaaatagagagactttaattgagggtatacaccaaactcaaccaa 6410330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 157
Target Start/End: Complemental strand, 10579673 - 10579523
Alignment:
Q  6 aaacttgacaaataccttcagataagagattacaacgattcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttcatcgct 105  Q
    |||||||| ||||||||||||||| |   |  |||  ||||||||||||||||||||||||||||||   |||||  |||||||| ||   |||||| |     
T  10579673 aaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacg 10579574  T
Q  106 taaccattgattttttcccaaatagagagactttaattgagggtatacacca 157  Q
    |||| ||  |||| | |||||||||||||| ||||||||| |||||||||||    
T  10579573 taacaatgaatttctacccaaatagagagattttaattga-ggtatacacca 10579523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 158
Target Start/End: Original strand, 19632595 - 19632750
Alignment:
Q  3 ttaaaacttgacaaataccttcagataagagattacaacgattcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttcatc 102  Q
    ||||||||||||||||| | | ||||| |  ||  |||||||||||||||||| ||| ||||||||| ||    ||||  |||||| | ||   ||||||    
T  19632595 ttaaaacttgacaaatagcattagatatgtaatagcaacgattcaaatcaagccgctacaaattgggaaaaaacgaagcgaacattgtaatcttttcatc 19632694  T
Q  103 gcttaaccattgattttttcccaaatagagagactttaattgagggtatacaccaa 158  Q
     ||||||| |  ||||   |||||||||||||||||||||||||||||||||||||    
T  19632695 acttaaccgtaaatttcgacccaaatagagagactttaattgagggtatacaccaa 19632750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 162
Target Start/End: Original strand, 6423417 - 6423535
Alignment:
Q  44 ttcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttcatcgcttaaccattgattttttcccaaatagagagactttaatt 143  Q
    ||||||||||| || |  ||||| |||||  |||||| ||||||||||||   |||||| ||||||||   | | |  ||||||||||||||||||||||    
T  6423417 ttcaaatcaagtagttttaaattagggaaaatggaagcaaacattatgatgatttcatcacttaaccacgaagtgtaacccaaatagagagactttaatt 6423516  T
Q  144 gagggtatacaccaaactc 162  Q
    |||||||||| ||||||||    
T  6423517 gagggtataccccaaactc 6423535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 7119316 - 7119385
Alignment:
Q  3 ttaaaacttgacaaataccttcagataagagattacaacgattcaaatcaagcagctgcaaattggggaa 72  Q
    ||||||||||||||||||||||||||| |  ||| |||  |||||||||||| || || |||||||||||    
T  7119316 ttaaaacttgacaaataccttcagatatgttattgcaagtattcaaatcaagaagttgtaaattggggaa 7119385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 7131794 - 7131863
Alignment:
Q  3 ttaaaacttgacaaataccttcagataagagattacaacgattcaaatcaagcagctgcaaattggggaa 72  Q
    ||||||||||||||||||||||||||| |  ||| |||  |||||||||||| || || |||||||||||    
T  7131794 ttaaaacttgacaaataccttcagatatgttattgcaagtattcaaatcaagaagttgtaaattggggaa 7131863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 6596749 - 6596717
Alignment:
Q  122 cccaaatagagagactttaattgagggtataca 154  Q
    |||||||||||||||||||||||||||||||||    
T  6596749 cccaaatagagagactttaattgagggtataca 6596717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 14820968 - 14821008
Alignment:
Q  122 cccaaatagagagactttaattgagggtatacaccaaactc 162  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  14820968 cccaaatagagagacttcaattgagggtatacaccatactc 14821008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 158
Target Start/End: Complemental strand, 6603105 - 6602990
Alignment:
Q  43 attcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttcatcgcttaaccattgattttttcccaaatagagagactttaat 142  Q
    |||||||||||| ||||||||| ||||||     |||| ||||||||||||   || | | |||||||||  ||| |  || ||||||||||||||||||    
T  6603105 attcaaatcaagtagctgcaaactggggatagaagaagcaaacattatgattttttgaacacttaaccataaattgtcacctaaatagagagactttaat 6603006  T
Q  143 tgagggtatacaccaa 158  Q
    |||||||||| |||||    
T  6603005 tgagggtatataccaa 6602990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 152
Target Start/End: Complemental strand, 6585103 - 6585073
Alignment:
Q  122 cccaaatagagagactttaattgagggtata 152  Q
    |||||||||||||||||||||||||||||||    
T  6585103 cccaaatagagagactttaattgagggtata 6585073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 354
Target Start/End: Complemental strand, 6594263 - 6594189
Alignment:
Q  280 gcaacaactaaggtttatggacatcaaaccactaagaaacggagacaattggacaacatgttgatcattaagaaa 354  Q
    |||| |||||||||| |||||| ||||||||  |||||||  |||||| | | |||||||||||||||| |||||    
T  6594263 gcaagaactaaggttaatggacttcaaaccagcaagaaacaaagacaactcggcaacatgttgatcattcagaaa 6594189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 6403162 - 6403195
Alignment:
Q  125 aaatagagagactttaattgagggtatacaccaa 158  Q
    ||||||||||||||||| ||||||||||||||||    
T  6403162 aaatagagagactttaactgagggtatacaccaa 6403195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 9411556 - 9411596
Alignment:
Q  45 tcaaatcaagcagctgcaaattggggaagttggaagaaaac 85  Q
    ||||||||||||||||||||||||||||  |||||| ||||    
T  9411556 tcaaatcaagcagctgcaaattggggaaaatggaagcaaac 9411596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 3 - 382
Target Start/End: Complemental strand, 13470672 - 13470293
Alignment:
Q  3 ttaaaacttgacaaataccttcagataagagattacaacgattcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttcatc 102  Q
    |||||||||||||||||||||  ||||||||||| |||| |||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||    
T  13470672 ttaaaacttgacaaataccttttgataagagattgcaacaattcaaatcaagcagctgcaaattggggaaattggaagcaaacattatgatgccttcatc 13470573  T
Q  103 gcttaaccattgattttttcccaaatagagagactttaattgagggtatacaccaaactcgaccaatttttcagaattctctacactcatactcttccct 202  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13470572 acttaaccattgattttttcccaaatagagagactttaattgagggtatacaccaacctcgaccaatttttcagaattctctacactcatactcttccct 13470473  T
Q  203 attccttccattttgatctcgctaagtagaggacagtttctagtgagtgcatacaaagcatattttgtgagcttaaggcaacaactaaggtttatggaca 302  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||    
T  13470472 attccttccattttgatctcactaagtagaggacagtttctagtgagtgcatacaaagctaattttgtgagcttaagacaacaactaaggtttatggaca 13470373  T
Q  303 tcaaaccactaagaaacggagacaattggacaacatgttgatcattaagaaacgaaagttcaagattcaaatgttggatg 382  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||| |||||| |||| |||||||  ||||||||||||    
T  13470372 tcaaaccactaagaaacgaagacaattggagaacatgttgatcattcagaaacaaaagctcaagatctaaatgttggatg 13470293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 3 - 188
Target Start/End: Complemental strand, 51764380 - 51764195
Alignment:
Q  3 ttaaaacttgacaaataccttcagataagagattacaacgattcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttcatc 102  Q
    ||||||||| ||| | ||||| ||||| | |||| |||  ||| ||||||||||||||||||||||||||  |||||| |||||||||||| | ||||||    
T  51764380 ttaaaacttcacagacacctttagatatgcgattgcaagaattaaaatcaagcagctgcaaattggggaaaatggaagcaaacattatgatgctttcatc 51764281  T
Q  103 gcttaaccattgattttttcccaaatagagagactttaattgagggtatacaccaaactcgaccaatttttcagaattctctacac 188  Q
     |||||||||  |||||  |||| ||||||||||||||||||||||||||||||||| || |||||    ||||||||||||||||    
T  51764280 acttaaccatgtattttcacccagatagagagactttaattgagggtatacaccaaagtccaccaaagaatcagaattctctacac 51764195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 354
Target Start/End: Complemental strand, 51764122 - 51764032
Alignment:
Q  264 attttgtgagcttaaggcaacaactaaggtttatggacatcaaaccactaagaaacggagacaattggacaacatgttgatcattaagaaa 354  Q
    |||| ||||||||| | |||| ||||||||||||||||| ||||  ||||||||||  |||||| |  |||||||||  |||||| |||||    
T  51764122 atttggtgagcttaggacaaccactaaggtttatggacaccaaattactaagaaacaaagacaaatttacaacatgtatatcattcagaaa 51764032  T

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Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 3 - 380
Target Start/End: Original strand, 10614752 - 10615129
Alignment:
Q  3 ttaaaacttgacaaataccttcagataagagattacaacgattcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttcatc 102  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||| ||||||| |||| |||| || ||||||||    
T  10614752 ttaaaacttgacaaataccttcatataagagattgcaacgattcaaatcaagcagttgcaaattggggaaattggaagcaaactttataatgccttcatc 10614851  T
Q  103 gcttaaccattgattttttcccaaatagagagactttaattgagggtatacaccaaactcgaccaatttttcagaattctctacactcatactcttccct 202  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||   |||||||||||||||||| ||||||||||     
T  10614852 gcttaaccactgattttttcccaaatagagagactttaattgagggtatacaccaaactccgccaatgaatcagaattctctacactcgtactcttccca 10614951  T
Q  203 attccttccattttgatctcgctaagtagaggacagtttctagtgagtgcatacaaagcatattttgtgagcttaaggcaacaactaaggtttatggaca 302  Q
    ||||||||||||||||| || | |||||||||||||||  ||||||||||||||||||   |||||||||||||||  ||||||||||||||||||||||    
T  10614952 attccttccattttgatttcaccaagtagaggacagttcttagtgagtgcatacaaagataattttgtgagcttaacacaacaactaaggtttatggaca 10615051  T
Q  303 tcaaaccactaagaaacggagacaattggacaacatgttgatcattaagaaacgaaagttcaagattcaaatgttgga 380  Q
    ||||| ||| |||||| | ||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||    
T  10615052 tcaaatcaccaagaaatgaagacaattggacaacatgttgatcattcagaaacggaagttcaagatccaaatgttgga 10615129  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 3 - 159
Target Start/End: Complemental strand, 10170070 - 10169914
Alignment:
Q  3 ttaaaacttgacaaataccttcagataagagattacaacgattcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttcatc 102  Q
    |||||||||||||||| ||||| |||| | |||| |||   |||||||||| ||||| |||||| || ||  |||||||||||||||||||   ||||||    
T  10170070 ttaaaacttgacaaatgccttccgatatgtgattgcaagagttcaaatcaaacagcttcaaattaggaaaaatggaagaaaacattatgatgtgttcatc 10169971  T
Q  103 gcttaaccattgattttttcccaaatagagagactttaattgagggtatacaccaaa 159  Q
     |||| ||||  ||| |   |||||||||||||||| ||||||||||||||||||||    
T  10169970 ccttacccatgtattgtaagccaaatagagagacttcaattgagggtatacaccaaa 10169914  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 3 - 159
Target Start/End: Complemental strand, 10177595 - 10177439
Alignment:
Q  3 ttaaaacttgacaaataccttcagataagagattacaacgattcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttcatc 102  Q
    |||||||||||||||| ||||| |||| | |||| |||   |||||||||| ||||| |||||| || ||  |||||||||||||||||||   ||||||    
T  10177595 ttaaaacttgacaaatgccttccgatatgtgattgcaagagttcaaatcaaacagcttcaaattaggaaaaatggaagaaaacattatgatgtgttcatc 10177496  T
Q  103 gcttaaccattgattttttcccaaatagagagactttaattgagggtatacaccaaa 159  Q
     |||| ||||  ||| |   |||||||||||||||| ||||||||||||||||||||    
T  10177495 ccttacccatgtattgtaagccaaatagagagacttcaattgagggtatacaccaaa 10177439  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 15091971 - 15091932
Alignment:
Q  123 ccaaatagagagactttaattgagggtatacaccaaactc 162  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  15091971 ccaaatagagagactttaattgagggtatacaccaaactc 15091932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 10167494 - 10167458
Alignment:
Q  123 ccaaatagagagactttaattgagggtatacaccaaa 159  Q
    |||||||||||||||| ||||||||||||||||||||    
T  10167494 ccaaatagagagacttcaattgagggtatacaccaaa 10167458  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 45 - 355
Target Start/End: Complemental strand, 21834276 - 21833969
Alignment:
Q  45 tcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttcatcgcttaaccattgattttttcccaaatagagagactttaattg 144  Q
    |||||||||||||||| |||||||||||  | |||| |||||||||||| | ||||||  ||||||||  |||    |||||| ||||||||||||||||    
T  21834276 tcaaatcaagcagctgtaaattggggaaaattgaagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaaaagagagactttaattg 21834177  T
Q  145 agggtatacaccaaactcgaccaatttttcagaattctctacactcatactcttccctattccttccattttgatctcgctaagtagaggacagtttcta 244  Q
    |||||| |||||||| || |||||   |||||||||| ||  |||| |||   |||| ||   ||||||||||||||| |||||   | |||||||  ||    
T  21834176 agggtacacaccaaaatccaccaaagattcagaattccctcgactcttac---tcccaatatgttccattttgatctcactaagcgaatgacagttctta 21834080  T
Q  245 gtgagtgcatacaaagcatattttgtgagcttaaggcaacaactaaggtttatggacatcaaaccactaagaaacggagacaattggacaacatgttgat 344  Q
       |||| | ||||||||  ||  |||||||||   |||| ||||||||||||||| |||||| ||| |||||| | | |||| ||||||||||||||||    
T  21834079 acaagtgtaaacaaagcacgttcagtgagcttatcacaaccactaaggtttatggaaatcaaatcaccaagaaatgaatacaactggacaacatgttgat 21833980  T
Q  345 cattaagaaac 355  Q
    |||| ||||||    
T  21833979 cattcagaaac 21833969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 140 - 344
Target Start/End: Complemental strand, 53761582 - 53761381
Alignment:
Q  140 aattgagggtatacaccaaactcgaccaatttttcagaattctctacactcatactcttccctattccttccattttgatctcgctaagtagaggacagt 239  Q
    ||||||||||||||||||| ||| | | |   |||||||||||||||| ||  |   |||||||||| ||||||||||||||| ||||||  ||||||||    
T  53761582 aattgagggtatacaccaagctccatcgaagattcagaattctctacaatctca---ttccctattctttccattttgatctcactaagtgaaggacagt 53761486  T
Q  240 ttctagtgagtgcatacaaagcatattttgtgagcttaaggcaacaactaaggtttatggacatcaaaccactaagaaacggagacaattggacaacatg 339  Q
    || |||  |||||| |||| ||  ||||||||| ||||   |||| ||||||||||||||||| |||| ||| ||||| |  |||||| |  ||||||||    
T  53761485 ttttagcaagtgcaaacaaggccaattttgtgatcttataacaacgactaaggtttatggacaccaaatcaccaagaagcaaagacaaatttacaacatg 53761386  T
Q  340 ttgat 344  Q
    |||||    
T  53761385 ttgat 53761381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 547119 - 547220
Alignment:
Q  47 aaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttcatcgcttaaccattgattttttcccaaatagagagactttaattgag 146  Q
    ||||||||||| ||||||||||||||  |||||| ||||||| |||| | |||||| ||||  |||  ||||||  |||||| ||||||||| |||||||    
T  547119 aaatcaagcagttgcaaattggggaacatggaaggaaacattttgatgctttcatctcttatgcatgaatttttagccaaatggagagacttcaattgag 547218  T
Q  147 gg 148  Q
    ||    
T  547219 gg 547220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 1600623 - 1600671
Alignment:
Q  45 tcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgat 93  Q
    ||||||||||||| ||||||||||| || ||||||| ||||||||||||    
T  1600623 tcaaatcaagcagttgcaaattgggaaaattggaagcaaacattatgat 1600671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 3 - 196
Target Start/End: Complemental strand, 19468439 - 19468246
Alignment:
Q  3 ttaaaacttgacaaataccttcagataagagattacaacgattcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttcatc 102  Q
    |||||||||||||||| ||||| |||| | | || ||    |||||||||||||||||||||||||| ||  |||||| ||||||||||||   ||||||    
T  19468439 ttaaaacttgacaaatgccttccgatatgtggttgcatgagttcaaatcaagcagctgcaaattgggaaaaatggaagcaaacattatgatgttttcatc 19468340  T
Q  103 gcttaaccattgattttttcccaaatagagagactttaattgagggtatacaccaaactcgaccaatttttcagaattctctacactcatactc 196  Q
    ||||||||||  ||| |   |||| |||||| |||||||||||||| |||||||||| ||   |||    |||||||||||||||||| |||||    
T  19468339 gcttaaccatgaattctcagccaagtagagatactttaattgagggaatacaccaaaatccggcaaagaatcagaattctctacactcttactc 19468246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 9581276 - 9581385
Alignment:
Q  49 atcaagcagctgcaaattggggaagttggaagaaaacattatgataccttcatcgcttaaccattgattttttcccaaatagagagactttaattgaggg 148  Q
    ||||||||||||||||||||||||  | |||| ||||||||||||   || ||| ||||| |||||||| |  |||||||  ||||||||||||||||||    
T  9581276 atcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctcttaaacattgattgtgacccaaatcaagagactttaattgaggg 9581375  T
Q  149 tatacaccaa 158  Q
      ||||||||    
T  9581376 cttacaccaa 9581385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 147
Target Start/End: Original strand, 9586844 - 9586942
Alignment:
Q  49 atcaagcagctgcaaattggggaagttggaagaaaacattatgataccttcatcgcttaaccattgattttttcccaaatagagagactttaattgagg 147  Q
    ||||||||||||||||||||||||  | |||| ||||||||||||   || ||| ||||||||||||||    |||||||  |||||||| ||||||||    
T  9586844 atcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctcttaaccattgattgcgacccaaatcaagagacttcaattgagg 9586942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 208 - 355
Target Start/End: Original strand, 28532075 - 28532222
Alignment:
Q  208 ttccattttgatctcgctaagtagaggacagtttctagtgagtgcatacaaagcatattttgtgagcttaaggcaacaactaaggtttatggacatcaaa 307  Q
    ||||||| ||||||| | ||||| ||||||||| |||| ||||||| ||||||   ||| ||| ||||||   |||  ||||||||| ||||||||||||    
T  28532075 ttccattgtgatctcaccaagtaaaggacagttcctagcgagtgcaaacaaagatgattctgttagcttatcacaattactaaggttgatggacatcaaa 28532174  T
Q  308 ccactaagaaacggagacaattggacaacatgttgatcattaagaaac 355  Q
     ||| |||||||| |||||| |||| ||||||||||||||| ||||||    
T  28532175 tcaccaagaaacgaagacaactggataacatgttgatcattcagaaac 28532222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 28525170 - 28525328
Alignment:
Q  3 ttaaaacttgacaaataccttcagataagagattacaacgattcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttcatc 102  Q
    |||||||||||||||||| || ||||| | | |||||| | | ||||| ||||| || ||||||| ||||  |||||| |||| ||||||||  ||| ||    
T  28525170 ttaaaacttgacaaatacatttagatatgtgcttacaatggtccaaattaagcacctccaaattgtggaaaatggaagcaaaccttatgatattttcgtc 28525269  T
Q  103 gcttaaccattgattttttcccaaatagagagactttaattgagggtatacaccaaact 161  Q
     |||||||||  ||| |  | ||||| |||||||||||||||||| | || ||||||||    
T  28525270 ccttaaccatgaattgtcacacaaattgagagactttaattgaggatgtagaccaaact 28525328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 161
Target Start/End: Complemental strand, 20477966 - 20477864
Alignment:
Q  59 tgcaaattggggaagttggaagaaaacattatgataccttcatcgcttaaccattgattttttcccaaatagagagactttaattgagggtatacaccaa 158  Q
    ||||||||||||||  | |||| ||| ||||| ||   |||||| ||||||||| |||| |  ||||| ||||||||||| ||| |||| ||||||||||    
T  20477966 tgcaaattggggaacatagaagcaaatattattattatttcatcacttaaccatggattatgacccaagtagagagacttcaatcgaggatatacaccaa 20477867  T
Q  159 act 161  Q
    |||    
T  20477866 act 20477864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 41889449 - 41889375
Alignment:
Q  45 tcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttcatcgcttaaccattgatttt 119  Q
    |||||||||| ||||||||||| |||||  |||||| ||||||||||||  |||||||   ||||||| ||||||    
T  41889449 tcaaatcaagtagctgcaaattagggaaaatggaagcaaacattatgatgtcttcatctgataaccatggatttt 41889375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 41901433 - 41901376
Alignment:
Q  45 tcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttcatc 102  Q
    ||||||||||||||||||||||||||||  ||||||  |||||| ||||  |||||||    
T  41901433 tcaaatcaagcagctgcaaattggggaaaatggaagcgaacattgtgatgtcttcatc 41901376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 18315168 - 18315101
Alignment:
Q  45 tcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttcatcgcttaaccat 112  Q
    |||||||||||| |||||||||||||||  |||||||||| ||| |||| | ||| || |||||||||    
T  18315168 tcaaatcaagcaactgcaaattggggaaaatggaagaaaatattttgatgctttcctctcttaaccat 18315101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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