View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12071_low_2 (Length: 950)
Name: NF12071_low_2
Description: NF12071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12071_low_2 |
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| [»] scaffold0290 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 453
Target Start/End: Original strand, 45148832 - 45149272
Alignment:
| Q |
13 |
tggacatcaatggtgttttgcatatgtgcagagtggaatgttggatgaagcgagaagagttttcgatgaaatgctgggaaaaagaaaaatgacatacaat |
112 |
Q |
| |
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|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||| |||||||| |
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| T |
45148832 |
tggacagcaatggtgttt-gcatatgtgcagagtggaatgttggatgaagcgagaagagttttcgatgaaatgccgggaaaaagagagatggcatacaat |
45148930 |
T |
|
| Q |
113 |
gtgatgattgtaggatatgtgcaatacaataaaatggatatggcaagggaattgtttgaggcaatgccatgtcggaatgtaggttcatggaataccatga |
212 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
45148931 |
gtgatgattgcaggatatgtgcaatacaagaaaatggatatggcaagggaattgtttgaggcaatgccttgtcggaatgtaggttcatggaataccatta |
45149030 |
T |
|
| Q |
213 |
tcaacggctatggtcagaacgaagatattgctcaagctatgaaattgtttcacatgatggatccgcgcgattgtgtatcttgggtggcaattattgatgg |
312 |
Q |
| |
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||| ||||||||||||||||| ||||||||||||||||| | |||||||| |||||||| || |||||||||||||||||||| ||||||||||| ||| |
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| T |
45149031 |
tcagcggctatggtcagaacggagatattgctcaagctagggaattgtttgacatgatgactcagcgcgattgtgtatcttgggcggcaattattgctgg |
45149130 |
T |
|
| Q |
313 |
ttatgctcagactggtcactatgaagaagttatggacatgctggtgaagatgtaaaggg-cggcgaaagtttaaatagatctaccttatgtggtgctttg |
411 |
Q |
| |
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||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||| |||| |||||||||||||||||||||| ||| |||||||| |
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| T |
45149131 |
ttatgctcagactggtcactatgaaaaagttatgcacatgctggtgaagatgaaaagggacggcaaaagtttaaatagatctaccttttgttgtgctttg |
45149230 |
T |
|
| Q |
412 |
agcacatgtgctggtatggctgctttcgtgttagggaaacaa |
453 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45149231 |
agcacatgtgctggtatggctgctttggtgttagggaaacaa |
45149272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 105 - 453
Target Start/End: Original strand, 45165284 - 45165633
Alignment:
| Q |
105 |
catacaatgtgatgattgtaggatatgtgcaatacaataaaatggatatggcaagggaattgtttgaggcaatgccatgtcggaatgtaggttcatggaa |
204 |
Q |
| |
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||||||||| ||||||| || ||||||||| || |||||||| || |||||||| ||||||||| | ||||| ||||||||| || |||||||||| |
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| T |
45165284 |
catacaatgcaatgattgcgggttatgtgcaaactaagaaaatggacatcgcaagggagttgtttgagtctatgccctgtcggaatataagttcatggaa |
45165383 |
T |
|
| Q |
205 |
taccatgatcaacggctatggtcagaacgaagatattgctcaagctatgaaattgtttcacatgatggatccgcgcgattgtgtatcttgggtggcaatt |
304 |
Q |
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||||||||| | ||||||||||||| | ||| |||||||| |||| ||||| ||| | |||||| | ||| || ||||||||||||| ||| ||| |
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| T |
45165384 |
taccatgattacaggctatggtcagattggagacattgctcaggctagaaaattctttgatatgatgccacagcgtgactgtgtatcttgggcggctatt |
45165483 |
T |
|
| Q |
305 |
attgatggttatgctcagactggtcactatgaagaagttatggacatgctggtgaagatgtaa-agggcggcgaaagtttaaatagatctaccttatgtg |
403 |
Q |
| |
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|||| |||||||||||||| |||||||||||||||| | || ||||| | || |||| || | | ||| |||||||||||||| |||| || || |
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| T |
45165484 |
attgctggttatgctcagagcggtcactatgaagaagctctgaacatgtttgtagagataaaacaagacggagaaagtttaaatagggctacttttggtt |
45165583 |
T |
|
| Q |
404 |
gtgctttgagcacatgtgctggtatggctgctttcgtgttagggaaacaa |
453 |
Q |
| |
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||||||||||||||||||||| ||| |||||||| | ||| ||||||||| |
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|
| T |
45165584 |
gtgctttgagcacatgtgctgatattgctgctttggagttggggaaacaa |
45165633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 265; Significance: 1e-147; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 13 - 456
Target Start/End: Complemental strand, 24137068 - 24136628
Alignment:
| Q |
13 |
tggacatcaatggtgttttgcatatgtgcagagtggaatgttggatgaagcgagaagagttttcgatgaaatgctgggaaaaagaaaaatgacatacaat |
112 |
Q |
| |
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|||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
24137068 |
tggacaacaatggtgttt-gcatatgtgcatagtggaatgttggatgaagcgagaggagttttcgatgaaatgccgggaaaaagaaagatgacatacaat |
24136970 |
T |
|
| Q |
113 |
gtgatgattgtaggatatgtgcaatacaataaaatggatatggcaagggaattgtttgaggcaatgccatgtcggaatgtaggttcatggaataccatga |
212 |
Q |
| |
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|||||||||| | ||||||||||| |||| ||||||||||||| ||||||||||| ||||| |||||| |||| |||||||||||| ||||| ||||||| |
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|
| T |
24136969 |
gtgatgattgcatgatatgtgcaaaacaagaaaatggatatgg-aagggaattgtatgaggtaatgccttgtcagaatgtaggttcctggaa-accatga |
24136872 |
T |
|
| Q |
213 |
tcaacggctatggtcagaacgaagatattgctcaagctatgaaattgtttcacatgatggatccgcgcgattgtgtatcttgggtggcaattattgatgg |
312 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| || |||||||||| |||||||| |||||||||| ||| |
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| T |
24136871 |
tcaacggctatggtcagaacgaagatattgctcaagctaggaaattgtttgacatgatggctcaacgcgattgtgcatcttgggaagcaattattgctgg |
24136772 |
T |
|
| Q |
313 |
ttatgctcagactggtcactatgaagaagttatggacatgctggtgaagatgtaaaggg-cggcgaaagtttaaatagatctaccttatgtggtgctttg |
411 |
Q |
| |
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||| ||| ||||||||||||||||| ||| |||||||||||||||||||||| |||||| |||| ||| |||||||||||||||||||||| ||| || |
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|
| T |
24136771 |
ttaggctaagactggtcactatgaataagctatggacatgctggtgaagatgaaaagggacggcaaaaatttaaatagatctaccttatgt-ttgcctta |
24136673 |
T |
|
| Q |
412 |
agcacatgtgctggtatggctgctttcgtgttagggaaacaactt |
456 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
24136672 |
agcacatgtgctggtatggctgctttggtgttagggaaacgactt |
24136628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 29 - 456
Target Start/End: Complemental strand, 24134742 - 24134314
Alignment:
| Q |
29 |
tttgcatatgtgcagagtggaatgttggatgaagcgagaagagttttcgatgaaatgctgggaaaaagaaaaatgacatacaatgtgatgattgtaggat |
128 |
Q |
| |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||| || ||| |
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|
| T |
24134742 |
tttgcatatgtgcagagtggaatgttggatcatgcgagaagagttttcgatgaaatgccgggaaaatgaaagatgacatacaatgtgatggttaagggaa |
24134643 |
T |
|
| Q |
129 |
atgtgcaatacaataaaatggatatggcaagggaattgtttgaggcaatgccatgtcggaatgtaggttcatggaataccatgatcaacggctatggtca |
228 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||| |
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|
| T |
24134642 |
atgtgcaatacaagcaaatggatatggcaagggaattgtttgaggcaatgccatgttggaatgtaggttcgtggaataccatgatcaacggctatgatca |
24134543 |
T |
|
| Q |
229 |
gaacgaagatattgctcaagctatgaaattgtttcacatgatggatccgcgcgattgtgtatcttgggtggcaattattgatggttatgctcagactggt |
328 |
Q |
| |
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||| | | |||||||||||| | ||||||||| ||||||||| | ||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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|
| T |
24134542 |
gaaaggaaatattgctcaagttggcaaattgtttgacatgatggctaaccgcgattgtgtatcttgggtggcaattattggtggttaggctcagactggt |
24134443 |
T |
|
| Q |
329 |
cactatgaagaagttatggacatgctggtgaagatgtaaaggg-cggcgaaagtttaaatagatctaccttatgtggtgctttgagcacatgtgctggta |
427 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||| |||||| |||||||||||| ||||| ||| |||||| || |||||||||||||||||||| |
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| T |
24134442 |
cattatgaagaagctatggacatgctggtgaagatgaaaagggatggcgaaagtttatgtagatatacattatgttgtcatttgagcacatgtgctggta |
24134343 |
T |
|
| Q |
428 |
tggctgctttcgtgttagggaaacaactt |
456 |
Q |
| |
|
|||||||||| |||||| ||||||||||| |
|
|
| T |
24134342 |
tggctgctttggtgttaaggaaacaactt |
24134314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 299 - 522
Target Start/End: Complemental strand, 24134238 - 24134014
Alignment:
| Q |
299 |
gcaattattgatggttatgctcagactggtcactatgaagaagttatggacatgctggtgaagatgtaaaggg-cggcgaaagtttaaatagatctacct |
397 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||| |
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|
| T |
24134238 |
gcaattattgatggttatgcacagactgatcactatgaagaagttatggacatgctggtgaagatgaaaagggacggcgaaagtgtaaatagatctacct |
24134139 |
T |
|
| Q |
398 |
tatgtggtgctttgagcacatgtgctggtatggctgctttcgtgttagggaaacaactttgtaatatcccattcatcagttattggagatttttcagtcg |
497 |
Q |
| |
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|||||||||||||||||||||||| | ||| |||||||||| || |||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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|
| T |
24134138 |
tatgtggtgctttgagcacatgtgttcgtaaggctgctttcatgctagggaaacaactttgtaatataccacccatcagttattggagatttttcagtcg |
24134039 |
T |
|
| Q |
498 |
aacgtttccaaaggcgaatgtaagt |
522 |
Q |
| |
|
||||||||||| |||||||| |||| |
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|
| T |
24134038 |
aacgtttccaagggcgaatgcaagt |
24134014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 2e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 771 - 936
Target Start/End: Complemental strand, 22829045 - 22828880
Alignment:
| Q |
771 |
aacattgagccttaatgcaagcctaatccttctattttcttccctctctctgtcgagttcccaccttcctcccttctttgataatttgaagaatttataa |
870 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
22829045 |
aacattgagccttaatgcaagcctaatccttctattttcttccctctctctgtcgagttcccaccttcctcccttctttgataatttgaagaattgaaaa |
22828946 |
T |
|
| Q |
871 |
gcaagaatcattgcatgtttgattagagtggtcattaagggttaatgggtatttggaagcaagaag |
936 |
Q |
| |
|
|||| | |||||||||||||||||||||| | |||||||||||||||||| ||| || ||||||| |
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|
| T |
22828945 |
gcaactaccattgcatgtttgattagagtgatgattaagggttaatgggtacttgaaatcaagaag |
22828880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 585 - 624
Target Start/End: Original strand, 4256 - 4295
Alignment:
| Q |
585 |
agtgtcagaataagaacgattaagacgaagggtattttgg |
624 |
Q |
| |
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||||||| |||||||||| ||||||||||||||||||||| |
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| T |
4256 |
agtgtcaaaataagaacggttaagacgaagggtattttgg |
4295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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