View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12071_low_20 (Length: 365)
Name: NF12071_low_20
Description: NF12071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12071_low_20 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 14 - 365
Target Start/End: Complemental strand, 14736572 - 14736221
Alignment:
| Q |
14 |
cctgtgtcattcatatctttcctcaagtctttagagagatattcaaatttcggtgaatattcttaaatgacgttcctaatcttggtcttgacgacatagc |
113 |
Q |
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| T |
14736572 |
cctgtgtcattcatatctttcctcaagtctttagagagatattcaaatttcggtgaatattcttaaatgacgttcctaatcttggtcttgacgacatatc |
14736473 |
T |
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| Q |
114 |
attcaaaaatatctaacttgggttgatagataaatgggtgcttttccaaaatcagaaaatcttcaattcctcaagctgaataatttccataacacatttc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14736472 |
attcaaaaatatctaacttgggttgatagataaatgagtgcttttccaaaatcagaaaatcttcaattcctcaagctgaataatttccataacacatttt |
14736373 |
T |
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| Q |
214 |
cttggttatgatttatgtggtggctcatacacctcggagatggagaaaaacaaaaccaaacacgccaatacatttggcatttgttagtaagttccttaat |
313 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
14736372 |
cttggttatgatttgtgtggtggctcatacacctcggagatagagaaaaacaaaaccaaacacgccaatacatctgacatttgttagtaagttccttaat |
14736273 |
T |
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| Q |
314 |
ccacttatttgtacaactctgtcttaggtcactaacacttgaataccttcat |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14736272 |
ccacttatttgtacaactctgtcttaggtcactaacacttgaataccttcat |
14736221 |
T |
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