View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12071_low_21 (Length: 363)

Name: NF12071_low_21
Description: NF12071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12071_low_21
NF12071_low_21
[»] chr6 (5 HSPs)
chr6 (1-243)||(33891305-33891547)
chr6 (244-344)||(33891624-33891720)
chr6 (28-73)||(33911688-33911733)
chr6 (35-69)||(33886603-33886637)
chr6 (35-69)||(33894811-33894845)
[»] chr2 (2 HSPs)
chr2 (244-331)||(5900557-5900640)
chr2 (244-276)||(43633443-43633475)
[»] chr4 (3 HSPs)
chr4 (244-331)||(49588143-49588226)
chr4 (244-276)||(17889454-17889486)
chr4 (244-276)||(36790867-36790899)
[»] chr5 (7 HSPs)
chr5 (244-281)||(10212319-10212356)
chr5 (244-276)||(10102836-10102868)
chr5 (244-276)||(10105920-10105952)
chr5 (244-276)||(10109333-10109365)
chr5 (244-276)||(10209773-10209805)
chr5 (244-276)||(12109390-12109422)
chr5 (244-276)||(13856048-13856080)
[»] chr1 (3 HSPs)
chr1 (244-275)||(42217273-42217304)
chr1 (244-278)||(43014364-43014398)
chr1 (244-276)||(10542424-10542456)
[»] chr7 (1 HSPs)
chr7 (244-273)||(3641238-3641267)
[»] chr8 (3 HSPs)
chr8 (244-276)||(31555169-31555201)
chr8 (244-276)||(31558254-31558286)
chr8 (244-276)||(31878268-31878300)
[»] chr3 (1 HSPs)
chr3 (244-276)||(21884096-21884128)


Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 33891305 - 33891547
Alignment:
Q  1 atgtgttcagcacccttgacaattgccatatagaagagttgcttgacaatgaagtaatggaaccaagttactttgatgttgacgaaaccacaacgcaacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33891305 atgtgttcagcacccttgacaattgccatatagaagagttgcttgacaatgaagtaatggaaccaagttactttgatgttgacgaaaccacaacgcaacc 33891404  T
Q  101 atgattaaactgcatcaactgcatttgacggtgattctccgctatatcagtgattgcaatgcgactgcaacactctgagtgtaggaaagtaatttgtgca 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33891405 atgattaaattgcatcaactgcatttgacggtgattctccgctatatcagtgattgcaatgcgactgcaacactctgagtgtaggaaagtaatttgtgca 33891504  T
Q  201 agcagtaggaaagcccacatcggctagtttagaaatcaaagta 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  33891505 agcagtaggaaagcccacatcggctagtttagaaatcaaagta 33891547  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 244 - 344
Target Start/End: Original strand, 33891624 - 33891720
Alignment:
Q  244 attctttcgccttttactaaagaatactgtgtgtgtgtttgtcactagaagtggtatacgcttatttttgaaagggttctcgaaaagaaaactccgcaat 343  Q
    |||||||||||||||||||||||||||     ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||| |||||    
T  33891624 attctttcgccttttactaaagaatac----cgtgtgtttgtcactaaaagcggtatacgcttatttttgaaagggttctcgaaaagagaactctgcaat 33891719  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 33911688 - 33911733
Alignment:
Q  28 atatagaagagttgcttgacaatgaagtaatggaaccaagttactt 73  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||    
T  33911688 atatagaagagttgcttgacaaagaagtaatggaaccaagtcactt 33911733  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 33886603 - 33886637
Alignment:
Q  35 agagttgcttgacaatgaagtaatggaaccaagtt 69  Q
    ||||||||||||||||||||||||||||| |||||    
T  33886603 agagttgcttgacaatgaagtaatggaacaaagtt 33886637  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 33894845 - 33894811
Alignment:
Q  35 agagttgcttgacaatgaagtaatggaaccaagtt 69  Q
    ||||||||||||||||||||||||||||| |||||    
T  33894845 agagttgcttgacaatgaagtaatggaacaaagtt 33894811  T

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Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 244 - 331
Target Start/End: Original strand, 5900557 - 5900640
Alignment:
Q  244 attctttcgccttttactaaagaatactgtgtgtgtgtttgtcactagaagtggtatacgcttatttttgaaagggttctcgaaaaga 331  Q
    ||||||||||||||||||||||||||| ||||| ||||    ||||  ||| |||||||||||||||||| |||||||||||||||||    
T  5900557 attctttcgccttttactaaagaataccgtgtgcgtgt----cactttaagcggtatacgcttatttttggaagggttctcgaaaaga 5900640  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 276
Target Start/End: Complemental strand, 43633475 - 43633443
Alignment:
Q  244 attctttcgccttttactaaagaatactgtgtg 276  Q
    ||||||||||||||||||||||||||| |||||    
T  43633475 attctttcgccttttactaaagaataccgtgtg 43633443  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 331
Target Start/End: Complemental strand, 49588226 - 49588143
Alignment:
Q  244 attctttcgccttttactaaagaatactgtgtgtgtgtttgtcactagaagtggtatacgcttatttttgaaagggttctcgaaaaga 331  Q
    ||||||||||||||||||||||||||| ||||| |    |||||||  ||| ||||||||| |||||||| ||||||||| |||||||    
T  49588226 attctttcgccttttactaaagaataccgtgtgcg----tgtcactttaagcggtatacgcatatttttggaagggttcttgaaaaga 49588143  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 17889454 - 17889486
Alignment:
Q  244 attctttcgccttttactaaagaatactgtgtg 276  Q
    ||||||||||||||||||||||||||| |||||    
T  17889454 attctttcgccttttactaaagaataccgtgtg 17889486  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 36790867 - 36790899
Alignment:
Q  244 attctttcgccttttactaaagaatactgtgtg 276  Q
    ||||||||||||||||||||||||||| |||||    
T  36790867 attctttcgccttttactaaagaataccgtgtg 36790899  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 281
Target Start/End: Complemental strand, 10212356 - 10212319
Alignment:
Q  244 attctttcgccttttactaaagaatactgtgtgtgtgt 281  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  10212356 attctttcgccttttactaaagaatactgtgtgagtgt 10212319  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 10102836 - 10102868
Alignment:
Q  244 attctttcgccttttactaaagaatactgtgtg 276  Q
    ||||||||||||||||||||||||||| |||||    
T  10102836 attctttcgccttttactaaagaataccgtgtg 10102868  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 10105920 - 10105952
Alignment:
Q  244 attctttcgccttttactaaagaatactgtgtg 276  Q
    ||||||||||||||||||||||||||| |||||    
T  10105920 attctttcgccttttactaaagaataccgtgtg 10105952  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 10109333 - 10109365
Alignment:
Q  244 attctttcgccttttactaaagaatactgtgtg 276  Q
    ||||||||||||||||||||||||||| |||||    
T  10109333 attctttcgccttttactaaagaataccgtgtg 10109365  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 276
Target Start/End: Complemental strand, 10209805 - 10209773
Alignment:
Q  244 attctttcgccttttactaaagaatactgtgtg 276  Q
    ||||||||||||||||||||||||||| |||||    
T  10209805 attctttcgccttttactaaagaataccgtgtg 10209773  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 276
Target Start/End: Complemental strand, 12109422 - 12109390
Alignment:
Q  244 attctttcgccttttactaaagaatactgtgtg 276  Q
    ||||||||||||||||||||||||||| |||||    
T  12109422 attctttcgccttttactaaagaataccgtgtg 12109390  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 13856048 - 13856080
Alignment:
Q  244 attctttcgccttttactaaagaatactgtgtg 276  Q
    ||||||||||||||||||||||||||| |||||    
T  13856048 attctttcgccttttactaaagaataccgtgtg 13856080  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 275
Target Start/End: Complemental strand, 42217304 - 42217273
Alignment:
Q  244 attctttcgccttttactaaagaatactgtgt 275  Q
    ||||||||||||||||||||||||||||||||    
T  42217304 attctttcgccttttactaaagaatactgtgt 42217273  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 278
Target Start/End: Complemental strand, 43014398 - 43014364
Alignment:
Q  244 attctttcgccttttactaaagaatactgtgtgtg 278  Q
    ||||||||||||||||||||||||||| |||||||    
T  43014398 attctttcgccttttactaaagaataccgtgtgtg 43014364  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 10542424 - 10542456
Alignment:
Q  244 attctttcgccttttactaaagaatactgtgtg 276  Q
    ||||||||||||||||||||||||||| |||||    
T  10542424 attctttcgccttttactaaagaataccgtgtg 10542456  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 273
Target Start/End: Original strand, 3641238 - 3641267
Alignment:
Q  244 attctttcgccttttactaaagaatactgt 273  Q
    ||||||||||||||||||||||||||||||    
T  3641238 attctttcgccttttactaaagaatactgt 3641267  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 276
Target Start/End: Complemental strand, 31555201 - 31555169
Alignment:
Q  244 attctttcgccttttactaaagaatactgtgtg 276  Q
    ||||||||||||||||||||||||||| |||||    
T  31555201 attctttcgccttttactaaagaataccgtgtg 31555169  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 276
Target Start/End: Complemental strand, 31558286 - 31558254
Alignment:
Q  244 attctttcgccttttactaaagaatactgtgtg 276  Q
    ||||||||||||||||||||||||||| |||||    
T  31558286 attctttcgccttttactaaagaataccgtgtg 31558254  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 31878268 - 31878300
Alignment:
Q  244 attctttcgccttttactaaagaatactgtgtg 276  Q
    ||||||||||||||||||||||||||| |||||    
T  31878268 attctttcgccttttactaaagaataccgtgtg 31878300  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 276
Target Start/End: Complemental strand, 21884128 - 21884096
Alignment:
Q  244 attctttcgccttttactaaagaatactgtgtg 276  Q
    ||||||||||||||||||||||||||| |||||    
T  21884128 attctttcgccttttactaaagaataccgtgtg 21884096  T

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