View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12071_low_23 (Length: 314)

Name: NF12071_low_23
Description: NF12071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12071_low_23
NF12071_low_23
[»] chr4 (23 HSPs)
chr4 (95-298)||(19846449-19846652)
chr4 (101-295)||(13137004-13137198)
chr4 (127-276)||(30972395-30972544)
chr4 (113-283)||(9831320-9831490)
chr4 (120-190)||(10552667-10552737)
chr4 (102-295)||(52577908-52578101)
chr4 (113-293)||(22653213-22653393)
chr4 (120-193)||(27270006-27270079)
chr4 (108-159)||(20510453-20510504)
chr4 (117-295)||(13608945-13609122)
chr4 (198-295)||(13157355-13157452)
chr4 (120-185)||(30739519-30739584)
chr4 (95-292)||(22495342-22495539)
chr4 (123-295)||(25130444-25130616)
chr4 (136-295)||(18921836-18921995)
chr4 (128-193)||(21204906-21204971)
chr4 (106-190)||(29521675-29521759)
chr4 (228-280)||(29521771-29521823)
chr4 (95-159)||(37772972-37773036)
chr4 (123-159)||(54870821-54870857)
chr4 (126-185)||(11131193-11131252)
chr4 (109-208)||(43001720-43001819)
chr4 (255-298)||(48341373-48341416)
[»] chr2 (18 HSPs)
chr2 (101-293)||(45131107-45131299)
chr2 (176-283)||(2167548-2167655)
chr2 (123-285)||(40638806-40638968)
chr2 (119-293)||(18948721-18948895)
chr2 (117-295)||(38408911-38409089)
chr2 (129-280)||(35590162-35590313)
chr2 (120-190)||(24739846-24739916)
chr2 (120-190)||(841548-841618)
chr2 (111-283)||(20948044-20948216)
chr2 (101-159)||(8090528-8090586)
chr2 (120-185)||(1997697-1997762)
chr2 (101-282)||(27009135-27009316)
chr2 (101-295)||(30505639-30505833)
chr2 (101-159)||(37738066-37738124)
chr2 (95-159)||(18766730-18766794)
chr2 (108-151)||(9840834-9840877)
chr2 (251-292)||(12606788-12606829)
chr2 (258-295)||(36178788-36178825)
[»] chr3 (23 HSPs)
chr3 (117-295)||(8074647-8074828)
chr3 (95-295)||(25408689-25408888)
chr3 (117-284)||(4740934-4741101)
chr3 (101-284)||(13043284-13043467)
chr3 (101-284)||(13051361-13051544)
chr3 (108-298)||(20017410-20017600)
chr3 (106-280)||(25845587-25845761)
chr3 (123-159)||(6926011-6926047)
chr3 (120-194)||(42806289-42806363)
chr3 (123-193)||(53876884-53876954)
chr3 (90-295)||(23050039-23050244)
chr3 (251-295)||(35503851-35503895)
chr3 (256-295)||(6894117-6894156)
chr3 (108-159)||(33692888-33692939)
chr3 (130-185)||(37537238-37537293)
chr3 (231-277)||(51346337-51346383)
chr3 (129-194)||(19979287-19979352)
chr3 (106-211)||(36803166-36803271)
chr3 (126-211)||(41878700-41878785)
chr3 (251-295)||(3857742-3857786)
chr3 (251-295)||(19596139-19596183)
chr3 (126-194)||(22534028-22534096)
chr3 (126-194)||(29542393-29542461)
[»] chr1 (22 HSPs)
chr1 (96-295)||(26260675-26260874)
chr1 (107-295)||(40708431-40708618)
chr1 (117-293)||(42450624-42450800)
chr1 (101-280)||(34703463-34703642)
chr1 (108-295)||(44675019-44675206)
chr1 (101-280)||(15259337-15259518)
chr1 (101-283)||(27363736-27363918)
chr1 (101-159)||(36098601-36098659)
chr1 (101-220)||(6723692-6723811)
chr1 (101-284)||(32160004-32160187)
chr1 (123-225)||(12688172-12688274)
chr1 (123-193)||(48973677-48973747)
chr1 (106-280)||(31069584-31069758)
chr1 (126-211)||(28442151-28442236)
chr1 (255-295)||(42476239-42476279)
chr1 (252-295)||(44889203-44889246)
chr1 (120-190)||(4889479-4889549)
chr1 (108-186)||(9484878-9484956)
chr1 (233-274)||(5594963-5595004)
chr1 (123-191)||(5411767-5411835)
chr1 (255-295)||(33134298-33134338)
chr1 (251-295)||(51800474-51800518)
[»] chr5 (21 HSPs)
chr5 (101-295)||(19314984-19315178)
chr5 (101-283)||(27482652-27482834)
chr5 (101-295)||(704496-704690)
chr5 (101-284)||(31706406-31706589)
chr5 (101-265)||(26778700-26778864)
chr5 (102-276)||(18967796-18967970)
chr5 (101-185)||(16610602-16610686)
chr5 (101-151)||(29651780-29651830)
chr5 (128-194)||(32017992-32018058)
chr5 (120-185)||(7465257-7465322)
chr5 (95-220)||(25942590-25942715)
chr5 (120-280)||(7961144-7961304)
chr5 (123-159)||(21042009-21042045)
chr5 (116-190)||(39839933-39840007)
chr5 (255-295)||(8487974-8488014)
chr5 (108-159)||(12831501-12831552)
chr5 (108-159)||(12863476-12863527)
chr5 (123-194)||(29994643-29994714)
chr5 (255-298)||(34177620-34177663)
chr5 (175-280)||(22922505-22922610)
chr5 (175-280)||(22923148-22923253)
[»] chr6 (18 HSPs)
chr6 (108-295)||(17292754-17292940)
chr6 (96-283)||(7824113-7824300)
chr6 (123-295)||(29599171-29599342)
chr6 (101-284)||(32196798-32196981)
chr6 (95-280)||(9907097-9907282)
chr6 (102-295)||(11324391-11324584)
chr6 (108-220)||(2682761-2682873)
chr6 (101-280)||(18671974-18672152)
chr6 (120-190)||(32533064-32533134)
chr6 (120-185)||(15117251-15117316)
chr6 (176-280)||(14216076-14216180)
chr6 (228-280)||(34018116-34018168)
chr6 (252-295)||(5667497-5667540)
chr6 (95-159)||(12688247-12688311)
chr6 (251-291)||(31454171-31454211)
chr6 (117-192)||(22469449-22469524)
chr6 (95-186)||(27105304-27105395)
chr6 (95-186)||(27147113-27147204)
[»] chr8 (13 HSPs)
chr8 (95-283)||(8462488-8462675)
chr8 (101-295)||(39435435-39435628)
chr8 (120-295)||(33191203-33191377)
chr8 (120-185)||(38233236-38233301)
chr8 (120-185)||(38685794-38685859)
chr8 (122-190)||(41255039-41255107)
chr8 (119-185)||(37929141-37929207)
chr8 (119-295)||(31686427-31686603)
chr8 (108-159)||(5048546-5048597)
chr8 (122-191)||(10616932-10617001)
chr8 (126-194)||(7179036-7179104)
chr8 (251-295)||(37929031-37929075)
chr8 (255-295)||(43776142-43776182)
[»] chr7 (17 HSPs)
chr7 (101-284)||(47543361-47543544)
chr7 (117-282)||(17116400-17116565)
chr7 (96-283)||(10315007-10315194)
chr7 (120-190)||(40616734-40616804)
chr7 (101-160)||(34237213-34237272)
chr7 (117-295)||(9628124-9628301)
chr7 (102-187)||(26569739-26569824)
chr7 (129-190)||(27854911-27854972)
chr7 (231-295)||(16560015-16560079)
chr7 (231-295)||(16605583-16605647)
chr7 (169-280)||(40347918-40348029)
chr7 (108-159)||(41529450-41529501)
chr7 (256-295)||(8566908-8566947)
chr7 (101-148)||(42017858-42017905)
chr7 (102-276)||(12092619-12092793)
chr7 (108-148)||(16560163-16560203)
chr7 (108-148)||(16605459-16605499)
[»] scaffold0047 (1 HSPs)
scaffold0047 (95-277)||(64262-64444)
[»] scaffold0225 (1 HSPs)
scaffold0225 (256-295)||(6429-6468)


Alignment Details
Target: chr4 (Bit Score: 124; Significance: 9e-64; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 95 - 298
Target Start/End: Complemental strand, 19846652 - 19846449
Alignment:
Q  95 taacagttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtt 194  Q
    |||||||||| ||||||||| |||||| |||||||||| |||||||||||||||||| |||||||  ||||||||||||||||| || |||||||||||     
T  19846652 taacagttagacaatgcccaacatggtaaacggactaatccaccacccatgataattgaagggaagagaagcatacttcacctttaaacacatgaaagta 19846553  T
Q  195 tgagacttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaacc 294  Q
    |||||||||||||||||||||| |||||||| ||| ||||||||||||| |||| |||| |||||| ||||||| ||||||| ||||||| |||||||||    
T  19846552 tgagacttaatcttgtcaacaatctgcataattgaccattctttaccatcaaataacctattatttatttcctttcatattttccaaactattgcaaacc 19846453  T
Q  295 atat 298  Q
    ||||    
T  19846452 atat 19846449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 295
Target Start/End: Complemental strand, 13137198 - 13137004
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagac 200  Q
    |||||| ||||| || | ||| ||||||||||||||||| ||||||||||| |||  ||  | |||| | ||||||||||||||| || |||||   |||    
T  13137198 ttagcctatgcctagtaaggtaaacggactaagccaccaaccatgataattgaagaaaagagtagcaaatttcaccttcaaccacctgtaagttaacgac 13137099  T
Q  201 ttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    ||||||||||| ||   |||||||| ||||||||||||  | |||||    |||||||||||||| || ||||||||||| ||| ||||||||||    
T  13137098 ttaatcttgtccaccgtctgcataattgagcattcttttgcgttaaaaattctgttatttctttcttttcatatttcccacactcttgcaaacca 13137004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 276
Target Start/End: Original strand, 30972395 - 30972544
Alignment:
Q  127 gactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatcttgtcaacaacctgcataac 226  Q
    ||||||||||||| |||||||| || |||||||  |||| | | ||| |||||| ||||||||||||  | |||||||| || ||||| ||||||||||     
T  30972395 gactaagccaccagccatgatagttgaagggaagagaaggaaatttcgccttcagccacatgaaagtcagcgacttaattttatcaaccacctgcataat 30972494  T
Q  227 tgagcattctttaccattaaattacctgttatttctttccttccatattt 276  Q
    |||||| ||||| ||||||||   | ||||||||||||| ||||| ||||    
T  30972495 tgagcactctttgccattaaagagcatgttatttctttctttccaaattt 30972544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 113 - 283
Target Start/End: Complemental strand, 9831490 - 9831320
Alignment:
Q  113 cagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatcttgtca 212  Q
    |||||| |||||||||||||||||||| ||||||||||| ||||||| || | |  | ||| ||||||||||| | ||||   ||||||| ||||| ||     
T  9831490 cagcatagtgaacggactaagccaccagccatgataattgaagggaagtgtaacgaatttcgccttcaaccacctaaaagcaagagacttgatcttatcc 9831391  T
Q  213 acaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaac 283  Q
    || ||||| ||||| ||||| ||||||  ||||||   | ||||||||||||| ||||| |||| ||||||    
T  9831390 accacctgaataacagagcagtctttattattaaacagcatgttatttctttctttccaaattttccaaac 9831320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 10552737 - 10552667
Alignment:
Q  120 gtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaa 190  Q
    |||||||||||||||||||| |||||||| ||||||||||  | |||||||||||||||||||||| ||||    
T  10552737 gtgaacggactaagccaccaaccatgatagttaaagggaagagtagcatacttcaccttcaaccacttgaa 10552667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 295
Target Start/End: Complemental strand, 52578101 - 52577908
Alignment:
Q  102 tagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagact 201  Q
    ||||| ||||| || ||||  |||| |||||||||||| ||||||||||| |||||||  ||  || ||||||||||||||||| | ||||   | ||||    
T  52578101 tagcctatgcctagaatggcaaacgcactaagccaccaaccatgataattgaagggaagagatacaaacttcaccttcaaccacgtaaaagcaagggact 52578002  T
Q  202 taatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    ||||||| || |  ||||| | ||| |||||  ||||| |||| ||   ||||||||||||||||||||| |||||||| || || ||||||||    
T  52578001 taatcttatctatcacctgaagaaccgagcaaactttatcattgaaaagcctgttatttctttccttccagatttcccacaccgtagcaaacca 52577908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 293
Target Start/End: Complemental strand, 22653393 - 22653213
Alignment:
Q  113 cagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatcttgtca 212  Q
    ||||||||| ||| ||||||||||||| ||||||||||| |||| |||  ||||| | ||| ||||||||||||| || ||  | || |||||||| |||    
T  22653393 cagcatggtaaacagactaagccaccaaccatgataattgaaggtaatgtaagcaaatttcgccttcaaccacataaatgtgagcgatttaatcttatca 22653294  T
Q  213 acaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaac 293  Q
    || ||||| || || ||||||  |||  | || |||  ||||||||||||||| || || |||||||||||| | ||||||    
T  22653293 accacctgtattaccgagcatagtttgtctttgaatagcctgttatttctttcttttcaaatttcccaaactatagcaaac 22653213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 27270006 - 27270079
Alignment:
Q  120 gtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagt 193  Q
    ||||| |||||||||||||| ||||||||||| ||||||| ||||| | | ||| |||||||||||||||||||    
T  27270006 gtgaatggactaagccaccaaccatgataattgaagggaagtgaaggaaatttcgccttcaaccacatgaaagt 27270079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 20510504 - 20510453
Alignment:
Q  108 atgcccagcatggtgaacggactaagccaccacccatgataattaaagggaa 159  Q
    |||||||||||||||||||||||||||||||| |||||| |||| |||||||    
T  20510504 atgcccagcatggtgaacggactaagccaccaaccatgaaaattgaagggaa 20510453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 295
Target Start/End: Original strand, 13608945 - 13609122
Alignment:
Q  117 atggtgaacggactaagccaccacccatgataattaaagggaa--ttgaagcatacttcaccttcaaccacatgaaagtttgagacttaatcttgtcaac 214  Q
    ||||| ||||||||||||||||| ||||| ||||| |||||||  |||| | ||  ||| | ||||||||||||||||||   |||||||||||||||||    
T  13608945 atggtaaacggactaagccaccaaccatggtaattgaagggaagattgacgtat--ttccctttcaaccacatgaaagttgtcgacttaatcttgtcaac 13609042  T
Q  215 aacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
     ||| |   || ||| |||| |||  |||| ||   |||||||||||| || ||||| |||||||| ||||||||||||||    
T  13609043 caccggttgaattgaacatt-tttgtcattgaagaccctgttatttctctctttccaaatttcccacactgttgcaaacca 13609122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 295
Target Start/End: Complemental strand, 13157452 - 13157355
Alignment:
Q  198 gacttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    ||||| || ||||| || |||||||||| ||||| ||||||  |||||||   | |||| |||||||| |||||||||||||| ||||||||||||||    
T  13157452 gacttcattttgtccaccacctgcataattgagctttcttttgcattaaaaatcttgttgtttctttctttccatatttcccacactgttgcaaacca 13157355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 30739519 - 30739584
Alignment:
Q  120 gtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccac 185  Q
    ||||| ||||||  |||||| |||||||||||||||||||  || |||||||||||||||||||||    
T  30739519 gtgaaaggactattccaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccac 30739584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 95 - 292
Target Start/End: Original strand, 22495342 - 22495539
Alignment:
Q  95 taacagttagccaatgcccagcatggtgaacggactaagccaccacccatgataatt-aaaggga-attgaagcatacttcaccttcaaccacatgaaag 192  Q
    ||||| ||| |||||||| || |||||||||||| |||||||||| ||||| ||||| ||||  | ||||  ||||| ||| | ||||||||||||||||    
T  22495342 taacaattaaccaatgcctagaatggtgaacggattaagccaccaaccatggtaattgaaagatagattg--gcatatttctctttcaaccacatgaaag 22495439  T
Q  193 tttgagacttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaa 292  Q
    ||   ||| ||||||||||||| |||||   || ||| |||| |||  |||| ||   |||||||||||| || ||| | |||||||| |||||||||||    
T  22495440 ttgtcgacgtaatcttgtcaaccacctgttgaattgaacattttttgtcattgaagaccctgttatttctctctttctaaatttcccacactgttgcaaa 22495539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 295
Target Start/End: Original strand, 25130444 - 25130616
Alignment:
Q  123 aacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatcttgtcaacaacctgca 222  Q
    ||||||||||||||||| |||||||| || | || ||  | |||| | ||| ||||||||||||||||||   | ||||| ||||| || || || ||||    
T  25130444 aacggactaagccaccaaccatgatagttgagggaaagagtagcaaatttctccttcaaccacatgaaagcgagggacttgatcttatcgaccacttgca 25130543  T
Q  223 taactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
     || |||||||| | | || |||||  || |||| || ||||| |||||||||||||| ||| ||||||||||    
T  25130544 caattgagcattttgttcccttaaacaacttgttgttcctttctttccatatttcccacactattgcaaacca 25130616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 295
Target Start/End: Complemental strand, 18921995 - 18921836
Alignment:
Q  136 accacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatcttgtcaacaacctgcataactgagcattc 235  Q
    |||| |||||||||||||||||||  || ||||||||||||||||||||| |  ||||| |   ||||||| |||| || ||||| | || ||| |  |     
T  18921995 accaaccatgataattaaagggaagagatgcatacttcaccttcaaccacttataagttagcagcttaatcctgtccaccacctgaacaattgaactatg 18921896  T
Q  236 tttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    |||| |||||||   | |||| || ||||||||||| ||||||||||| |||||| ||||    
T  18921895 tttatcattaaaaatcatgttgttcctttccttccaaatttcccaaacagttgcacacca 18921836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 21204906 - 21204971
Alignment:
Q  128 actaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagt 193  Q
    |||||||||||| ||||||||||| ||||||| ||||| | | ||| | |||||||||||||||||    
T  21204906 actaagccaccaaccatgataattgaagggaagtgaagaaaatttcgcattcaaccacatgaaagt 21204971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 29521675 - 29521759
Alignment:
Q  106 caatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaa 190  Q
    ||||||||| ||| ||||||||| ||| ||||||  |||||||||| || ||||  |||||| | ||| ||||||||||||||||    
T  29521675 caatgcccaacattgtgaacggattaaaccaccaatcatgataattgaaaggaagagaagcacatttcgccttcaaccacatgaa 29521759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 29521771 - 29521823
Alignment:
Q  228 gagcattctttaccattaaattacctgttatttctttccttccatatttccca 280  Q
    |||||||||||||||| |||| |||||||||||||||  ||||| ||||||||    
T  29521771 gagcattctttaccatcaaataacctgttatttctttgtttccaaatttccca 29521823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 37773036 - 37772972
Alignment:
Q  95 taacagttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaa 159  Q
    ||||| ||| ||||||||||  |||||||| |||||||||||||| ||||| ||||| |||||||    
T  37773036 taacaattaaccaatgcccaaaatggtgaaaggactaagccaccaaccatggtaattgaagggaa 37772972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 54870821 - 54870857
Alignment:
Q  123 aacggactaagccaccacccatgataattaaagggaa 159  Q
    ||||||||||||||||| |||||||||||||||||||    
T  54870821 aacggactaagccaccaaccatgataattaaagggaa 54870857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 11131193 - 11131252
Alignment:
Q  126 ggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccac 185  Q
    |||||||||||||| |||||||||||||||||||  |   || |||||||||||||||||    
T  11131193 ggactaagccaccaaccatgataattaaagggaagagtgacaaacttcaccttcaaccac 11131252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 208
Target Start/End: Complemental strand, 43001819 - 43001720
Alignment:
Q  109 tgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatctt 208  Q
    |||||| |||| ||||||||||||||||||||  ||||||||| ||  |||  | || | ||||| ||||||||||||| || ||| | |||||||||||    
T  43001819 tgcccaacatgctgaacggactaagccaccacatatgataattgaaatgaagagtagtaaacttcgccttcaaccacataaatgttagtgacttaatctt 43001720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 298
Target Start/End: Original strand, 48341373 - 48341416
Alignment:
Q  255 ttatttctttccttccatatttcccaaactgttgcaaaccatat 298  Q
    |||||| ||||||||||||||||||| || ||||||||||||||    
T  48341373 ttatttatttccttccatatttcccacaccgttgcaaaccatat 48341416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 101 - 293
Target Start/End: Original strand, 45131107 - 45131299
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagac 200  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||  |||||||| ||| |||||||||||||||||||||| |||    
T  45131107 ttagccaatgcccagcatggtaaatggactaagccaccacccatgataattgaagggaagagaagcatatttccccttcaaccacatgaaagtttgcgac 45131206  T
Q  201 ttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaac 293  Q
     |||||||||| |||| ||||| |||||||||  ||||| | |||||| || |||||||||||||||||||||||| ||||||||||| ||||    
T  45131207 ataatcttgtcgacaatctgcacaactgagcacactttatcgttaaataacatgttatttctttccttccatattttccaaactgttgtaaac 45131299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 176 - 283
Target Start/End: Original strand, 2167548 - 2167655
Alignment:
Q  176 cttcaaccacatgaaagtttgagacttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatt 275  Q
    |||||||||||||||||| |||||||||||||| || ||||||||||||| |||||| ||||| ||||||||| |||||||||| ||||| |||||||||    
T  2167548 cttcaaccacatgaaagtgtgagacttaatcttctcgacaacctgcataattgagcaatctttgccattaaataacctgttattcctttctttccatatt 2167647  T
Q  276 tcccaaac 283  Q
    ||||||||    
T  2167648 tcccaaac 2167655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 123 - 285
Target Start/End: Original strand, 40638806 - 40638968
Alignment:
Q  123 aacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatcttgtcaacaacctgca 222  Q
    ||||||||||||||||||||||| ||||| |||||||  ||||||||||||| | |||||||| | || ||  | || ||||||||||| || |||||      
T  40638806 aacggactaagccaccacccatggtaattgaagggaagagaagcatacttcaacatcaaccacgtaaaggtaagcgatttaatcttgtcgaccacctgat 40638905  T
Q  223 taactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactg 285  Q
    |||||||||| |||||  |||||||  |||| || ||||||||||||||||||||||||||||    
T  40638906 taactgagcactctttgacattaaacaacctattgtttctttccttccatatttcccaaactg 40638968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 293
Target Start/End: Complemental strand, 18948895 - 18948721
Alignment:
Q  119 ggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatcttgtcaacaacc 218  Q
    |||||||||| |||||||||| || |||||||| |||| ||  || | | | |||||| |||||||| || |||||   |||||||| ||||| ||||||    
T  18948895 ggtgaacggattaagccaccaaccgtgataattgaaggcaagagatgaacatttcaccctcaaccacctgtaagttaccgacttaattttgtccacaacc 18948796  T
Q  219 tgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaac 293  Q
    ||||||| ||||||||||||  |||||||    || ||||||||||| |||||||||||||| || |||||||||    
T  18948795 tgcataattgagcattctttcgcattaaaagttctattatttctttctttccatatttcccataccgttgcaaac 18948721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 295
Target Start/End: Complemental strand, 38409089 - 38408911
Alignment:
Q  117 atggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatcttgtcaacaa 216  Q
    ||||| |||||||| | |||||| ||||||||||| ||||||| || |||  | |||||||||||| ||||| |||||   |||||||||||||| || |    
T  38409089 atggtaaacggactgaaccaccaaccatgataattgaagggaagtgtagcgaatttcaccttcaactacatgtaagttaacgacttaatcttgtccacca 38408990  T
Q  217 cctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    | ||||||| ||||||||||||  |||||||     |||||||||||||  | |||||||| || ||| ||||||||||    
T  38408989 cttgcataattgagcattcttttgcattaaaaattatgttatttctttctgttcatatttctcacactattgcaaacca 38408911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 280
Target Start/End: Complemental strand, 35590313 - 35590162
Alignment:
Q  129 ctaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatcttgtcaacaacctgcataactg 228  Q
    ||||||||||| |||||||| || |||||||   | | ||||||| |||||| |||| |||||||  |  ||||||| || ||||| ||||| |||| ||    
T  35590313 ctaagccaccaaccatgatagttgaagggaagacacggatacttcgccttcagccacctgaaagtcagcaacttaattttatcaaccacctgaataattg 35590214  T
Q  229 agcattctttaccattaaattacctgttatttctttccttccatatttccca 280  Q
    |||||||||| ||||| ||  |||||||||||||||| ||||| ||||||||    
T  35590213 agcattctttgccattgaaaaacctgttatttctttctttccagatttccca 35590162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 24739916 - 24739846
Alignment:
Q  120 gtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaa 190  Q
    |||||||||||||||||||| |||||||| ||||||||||  | |||||||||||||||||||||| ||||    
T  24739916 gtgaacggactaagccaccaaccatgatagttaaagggaagggtagcatacttcaccttcaaccacttgaa 24739846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 841548 - 841618
Alignment:
Q  120 gtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaa 190  Q
    |||||| ||||||||||||| |||||||| ||||||||||  | |||||||||||||||||||||| ||||    
T  841548 gtgaacagactaagccaccaaccatgatagttaaagggaagagtagcatacttcaccttcaaccacttgaa 841618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 283
Target Start/End: Complemental strand, 20948216 - 20948044
Alignment:
Q  111 cccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatcttgt 210  Q
    |||| |||||| ||||||||||||||||||||||| ||||| | | |||  |||| ||||||| |||||||||||   || |   | |||||||||||||    
T  20948216 cccaacatggtaaacggactaagccaccacccatggtaattgaggcgaagagaagaatacttcgccttcaaccacgaaaaggcaagcgacttaatcttgt 20948117  T
Q  211 caacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaac 283  Q
      || |||||   ||| ||||| |||||  |||||||  | || || ||||||||||||||||||||||||||    
T  20948116 tgaccacctgagaaaccgagcagtctttggcattaaacaatctattgtttctttccttccatatttcccaaac 20948044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 8090586 - 8090528
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaa 159  Q
    |||||||||||| |  ||||| ||||||||||||||||||||||||||||| |||||||    
T  8090586 ttagccaatgcctaaaatggtaaacggactaagccaccacccatgataattgaagggaa 8090528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 1997697 - 1997762
Alignment:
Q  120 gtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccac 185  Q
    ||||| ||||||  |||||| |||||||||||||||||||  || |||||||||||||||||||||    
T  1997697 gtgaaaggactattccaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccac 1997762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 282
Target Start/End: Complemental strand, 27009316 - 27009135
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagac 200  Q
    |||||| ||| |||| ||||| ||||||||||||||||| ||||| ||||| |||||||  |||| | | ||| ||||||| ||| | ||||   |||||    
T  27009316 ttagcctatgtccagtatggtaaacggactaagccaccaaccatggtaattgaagggaagagaagtaaatttcgccttcaatcacctaaaagcgagagac 27009217  T
Q  201 ttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaa 282  Q
    |||||||| ||||| || || || || |||| ||||||  | || |||  ||| ||||||||||| ||| | ||||||||||    
T  27009216 ttaatcttatcaaccacgtgtattaccgagcgttctttgtctttcaatagcctattatttctttctttcaaaatttcccaaa 27009135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 295
Target Start/End: Complemental strand, 30505833 - 30505639
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagac 200  Q
    |||||| ||||||| |||||| ||| |||||| |||||| ||||||||||| ||||||| ||||| | | ||| |||||||| | || || |   || ||    
T  30505833 ttagcctatgcccaacatggtaaacagactaaaccaccaaccatgataattgaagggaagtgaagaaaatttctccttcaactagataaatgcgagaaac 30505734  T
Q  201 ttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    |||||||| ||||| || || || |  ||| ||| |||  | || |||  ||||||||||||||| ||||| ||||| ||||| || ||||||||    
T  30505733 ttaatcttatcaaccacatgtattatcgagtattttttgtctttgaatagcctgttatttctttctttccaaatttctcaaacagtagcaaacca 30505639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 37738066 - 37738124
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaa 159  Q
    |||||| |||||||  ||||||||||||||||||||||| |||||| | ||||||||||    
T  37738066 ttagcctatgcccaaaatggtgaacggactaagccaccagccatgaaagttaaagggaa 37738124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 18766794 - 18766730
Alignment:
Q  95 taacagttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaa 159  Q
    ||||| |||||  |||||||| || ||||||||| |||||||||| |||||| ||||||||||||    
T  18766794 taacaattagcatatgcccagtattgtgaacggattaagccaccagccatgaaaattaaagggaa 18766730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 151
Target Start/End: Complemental strand, 9840877 - 9840834
Alignment:
Q  108 atgcccagcatggtgaacggactaagccaccacccatgataatt 151  Q
    ||||||| ||||||||||||| |||||||||| |||||||||||    
T  9840877 atgcccatcatggtgaacggattaagccaccaaccatgataatt 9840834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 12606829 - 12606788
Alignment:
Q  251 cctgttatttctttccttccatatttcccaaactgttgcaaa 292  Q
    |||||| |||||||| ||||| ||||||||||||||||||||    
T  12606829 cctgttgtttctttctttccaaatttcccaaactgttgcaaa 12606788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 295
Target Start/End: Complemental strand, 36178825 - 36178788
Alignment:
Q  258 tttctttccttccatatttcccaaactgttgcaaacca 295  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  36178825 tttctttctttcgatatttcccaaactgttgcaaacca 36178788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 117 - 295
Target Start/End: Original strand, 8074647 - 8074828
Alignment:
Q  117 atggtgaacggactaagccac---cacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatcttgtcaa 213  Q
    ||||| |||||||||||||||   |||||||||||||| |||| ||  |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8074647 atggtaaacggactaagccaccaccacccatgataattgaaggaaagagaagcatacttcacattcaaccacatgaaagtttgagacttaatcttgtcaa 8074746  T
Q  214 caacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    ||| ||||| ||||||||||||||| ||||||||| ||||||||||||| |||||||| | ||  |||| ||||||||||||    
T  8074747 caatctgcacaactgagcattctttgccattaaataacctgttatttctctccttccaaaattttcaaaatgttgcaaacca 8074828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 295
Target Start/End: Complemental strand, 25408888 - 25408689
Alignment:
Q  95 taacagttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtt 194  Q
    ||||| |||||| || |||| |||||| || |||||||||||||| ||||||||||| |||| ||||||||   | ||| |||||||||||| ||| |||    
T  25408888 taacaattagcctatacccaacatggtaaatggactaagccaccaaccatgataattgaaggaaattgaagtgaatttcgccttcaaccacacgaatgtt 25408789  T
Q  195 tgagacttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaacc 294  Q
      |||||||||||| || || | || ||||| || |||||| ||  ||||||| |   ||||||||||||| ||||| |||||||| || ||||||||||    
T  25408788 atagacttaatcttatcgaccatcttcataattgtgcattccttttcattaaaat-gttgttatttctttctttccagatttcccacacggttgcaaacc 25408690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 284
Target Start/End: Complemental strand, 4741101 - 4740934
Alignment:
Q  117 atggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatcttgtcaacaa 216  Q
    ||||| |||||||||||||| |||||||| ||||| |||||||  |||  |||||||  |||||||||| | ||||   | ||||||||||| || || |    
T  4741101 atggtaaacggactaagccatcacccatggtaattgaagggaagagaaatatacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgacca 4741002  T
Q  217 cctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaact 284  Q
    |||  ||||| ||||| |||||  |||||||  |||| || |||||||||||||||||||| ||||||    
T  4741001 cctagataaccgagcaatctttgacattaaacaacctattgtttctttccttccatatttctcaaact 4740934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 284
Target Start/End: Complemental strand, 13043467 - 13043284
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagac 200  Q
    |||||| |||||||  |||||||||||  |||||||||||||||| || || | |||||  ||   ||||||| |||||||||||   || |   | |||    
T  13043467 ttagcctatgcccaaaatggtgaacgggttaagccaccacccatggtagttgaggggaagagagaaatacttcgccttcaaccacgcaaaggcaagcgac 13043368  T
Q  201 ttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaact 284  Q
    ||||| ||||| || |||||  |||| |||||||||||  |||||||  |||| || |||||||||||||||||||||||||||    
T  13043367 ttaattttgtcgaccacctgattaaccgagcattctttgacattaaacaacctattgtttctttccttccatatttcccaaact 13043284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 284
Target Start/End: Complemental strand, 13051544 - 13051361
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagac 200  Q
    |||||| |||||||  |||||||||||  |||||||||||||||| || || | |||||  ||   ||||||| |||||||||||   || |   | |||    
T  13051544 ttagcctatgcccaaaatggtgaacgggttaagccaccacccatggtagttgaggggaagagagaaatacttcgccttcaaccacgcaaaggcaagcgac 13051445  T
Q  201 ttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaact 284  Q
    ||||| ||||| || |||||  |||| |||||||||||  |||||||  |||| || |||||||||||||||||||||||||||    
T  13051444 ttaattttgtcgaccacctgattaaccgagcattctttgacattaaacaacctattgtttctttccttccatatttcccaaact 13051361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 298
Target Start/End: Original strand, 20017410 - 20017600
Alignment:
Q  108 atgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatct 207  Q
    |||||||  ||||||||||||| ||||||||| ||||| || || ||||||| |||| || | |||  |||||||||| |  |||   ||||||||||||    
T  20017410 atgcccaaaatggtgaacggacaaagccaccagccatggtagtttaagggaagtgaaacaaatttcttcttcaaccacgtataagcaagagacttaatct 20017509  T
Q  208 tgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaaccatat 298  Q
    | || || ||||| | |   |||||| ||||| |||| ||   |||||||||||||||||||||||||||||| || || || ||||||||    
T  20017510 tttctaccacctgaaaattcgagcatactttatcattgaagagcctgttatttctttccttccatatttcccacaccgtagcgaaccatat 20017600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 280
Target Start/End: Complemental strand, 25845761 - 25845587
Alignment:
Q  106 caatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaat 205  Q
    |||||||||  |||||| | |||||||||||||| ||||| || || ||||| |  |||| | ||||| ||||||||||||||||||   | ||||||||    
T  25845761 caatgcccaaaatggtgtatggactaagccaccaaccatggtagttcaagggcagagaaggaaacttcgccttcaaccacatgaaagagagcgacttaat 25845662  T
Q  206 cttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttccca 280  Q
     || ||||| ||||| | || ||| || ||||| || |||||| |  |||| |||||||| ||||| ||||||||    
T  25845661 tttatcaaccacctgaacaattgaacaatctttgcctttaaataatatgttgtttctttctttccaaatttccca 25845587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 6926047 - 6926011
Alignment:
Q  123 aacggactaagccaccacccatgataattaaagggaa 159  Q
    |||||||||||||||||||||||||||||||||||||    
T  6926047 aacggactaagccaccacccatgataattaaagggaa 6926011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 42806289 - 42806363
Alignment:
Q  120 gtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtt 194  Q
    ||||| ||||||||||||||||||||||| ||||| ||||  |   || |||||||||||||||||| |||||||    
T  42806289 gtgaatggactaagccaccacccatgatagttaaaaggaagagtgacaaacttcaccttcaaccacaggaaagtt 42806363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 53876884 - 53876954
Alignment:
Q  123 aacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagt 193  Q
    ||||||| |||||||||||||||||||||||||||||  |   || |||||||||| |||||| |||||||    
T  53876884 aacggaccaagccaccacccatgataattaaagggaagagttacaaacttcacctttaaccacttgaaagt 53876954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 295
Target Start/End: Complemental strand, 23050244 - 23050039
Alignment:
Q  90 ggaattaacagttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatga 189  Q
    |||| ||||| |||||||||||| || || || || |||||||||||||| |||||  | || |||||||    ||| |  ||| ||||||||||| |||    
T  23050244 ggaactaacaattagccaatgcctaggatagtaaatggactaagccaccaaccatgggagtttaagggaagactagcgtgtttccccttcaaccacgtga 23050145  T
Q  190 aagtttgagacttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgc 289  Q
    ||||    |||||||||||||| || |||||||||| |||||| | ||| ||||| ||    ||| |||||| ||| ||||| |||| ||| || |||||    
T  23050144 aagtcgatgacttaatcttgtccactacctgcataattgagcaatatttgccattgaaaactctgatatttcattctttccaaattttccacacagttgc 23050045  T
Q  290 aaacca 295  Q
    ||||||    
T  23050044 aaacca 23050039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 35503895 - 35503851
Alignment:
Q  251 cctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    ||||||||||||||| ||||||||||||||||| || ||||||||    
T  35503895 cctgttatttctttctttccatatttcccaaacagtagcaaacca 35503851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 6894156 - 6894117
Alignment:
Q  256 tatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    |||| ||||||||||| |||||||||||||||||||||||    
T  6894156 tattcctttccttccaaatttcccaaactgttgcaaacca 6894117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 33692888 - 33692939
Alignment:
Q  108 atgcccagcatggtgaacggactaagccaccacccatgataattaaagggaa 159  Q
    |||||||||||||||||||| ||||||||||| |||||| | || |||||||    
T  33692888 atgcccagcatggtgaacgggctaagccaccaaccatgaaagttgaagggaa 33692939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 37537238 - 37537293
Alignment:
Q  130 taagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccac 185  Q
    |||||||||| ||||||||| |||||||||  |||||  |||||||||||||||||    
T  37537238 taagccaccaaccatgataagtaaagggaagagaagcgaacttcaccttcaaccac 37537293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 51346337 - 51346383
Alignment:
Q  231 cattctttaccattaaattacctgttatttctttccttccatatttc 277  Q
    |||||||||||||| ||| |||||||| ||||||| |||||||||||    
T  51346337 cattctttaccattgaataacctgttaattctttctttccatatttc 51346383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 19979287 - 19979352
Alignment:
Q  129 ctaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtt 194  Q
    ||||||||||| |||||||| ||||||||||  |   || ||||||||||||||||| ||||||||    
T  19979287 ctaagccaccaaccatgatagttaaagggaagagttacaaacttcaccttcaaccacttgaaagtt 19979352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 36803271 - 36803166
Alignment:
Q  106 caatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaat 205  Q
    |||||| || ||| ||||||||||||||||||||  ||||| |||| || ||||| |  | | ||||| ||||||||||||| |||||  | || |||||    
T  36803271 caatgctcaacattgtgaacggactaagccaccaagcatgaaaattgaaaggaatagtggtaaacttcgccttcaaccacataaaagtaagcgatttaat 36803172  T
Q  206 cttgtc 211  Q
    ||||||    
T  36803171 cttgtc 36803166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 211
Target Start/End: Complemental strand, 41878785 - 41878700
Alignment:
Q  126 ggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatcttgtc 211  Q
    |||||||||||||| |||||||| ||||||||||  |   || |||||||||||||||||  ||||||| |  |||||||| ||||    
T  41878785 ggactaagccaccaaccatgatagttaaagggaagagtgacaaacttcaccttcaaccactggaaagttagcaacttaatcctgtc 41878700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 3857742 - 3857786
Alignment:
Q  251 cctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    ||||||||||||||| ||||| |||||||| | ||||||||||||    
T  3857742 cctgttatttctttctttccaaatttcccacagtgttgcaaacca 3857786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 19596183 - 19596139
Alignment:
Q  251 cctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    ||||||||||||||||| ||||||||||||||  || ||||||||    
T  19596183 cctgttatttctttcctcccatatttcccaaagagtagcaaacca 19596139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 22534096 - 22534028
Alignment:
Q  126 ggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtt 194  Q
    ||||||||||||||||||||||| ||||| ||||  |   || |||||||||||||||||  |||||||    
T  22534096 ggactaagccaccacccatgatagttaaaaggaagagtgacaaacttcaccttcaaccactggaaagtt 22534028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 29542393 - 29542461
Alignment:
Q  126 ggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtt 194  Q
    |||||||||||||| |||||||| ||||||||||  |   || |||||||||||||||||  |||||||    
T  29542393 ggactaagccaccaaccatgatagttaaagggaagagtgacaaacttcaccttcaaccactggaaagtt 29542461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 96 - 295
Target Start/End: Complemental strand, 26260874 - 26260675
Alignment:
Q  96 aacagttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagttt 195  Q
    |||| |||||||||||||| |||||| || |||||||||||||||||||||||||| |||||||  |||||| ||||| ||||||||||| | ||||       
T  26260874 aacatttagccaatgcccaacatggtaaatggactaagccaccacccatgataattgaagggaagagaagcaaacttcgccttcaaccacgtaaaagcaa 26260775  T
Q  196 gagacttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    ||||||| ||| |||| || || || | |||||||||||| ||  | |||||  | |||||||||||||||||||| ||||| ||||| |||||||||||    
T  26260774 gagacttgatcatgtctaccacttgaagaactgagcattccttgacgttaaacaatctgttatttctttccttccaaatttctcaaaccgttgcaaacca 26260675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 107 - 295
Target Start/End: Original strand, 40708431 - 40708618
Alignment:
Q  107 aatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatc 206  Q
    |||||| || ||||| ||||||||||||||||   |||||||||| |||||||  ||| |||| ||||||| |||||||||||||||  ||||||||||     
T  40708431 aatgccaaggatggtaaacggactaagccaccgaacatgataattgaagggaagagaaacatatttcacct-caaccacatgaaagtcagagacttaatt 40708529  T
Q  207 ttgtcaacaacctgcataa-ctgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    ||||| || ||||||| || ||| ||||||||||||||||||| || ||||||||||||| || || |||||| | || |||||||||||    
T  40708530 ttgtctaccacctgcacaatctg-gcattctttaccattaaataacttgttatttctttcttttcaaatttcctacacggttgcaaacca 40708618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 293
Target Start/End: Original strand, 42450624 - 42450800
Alignment:
Q  117 atggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatcttgtcaacaa 216  Q
    |||||||||||| |||||||||| || |||||||| |||| ||  || | | | |||||| |||||||| || |||||   |||||||| || || ||||    
T  42450624 atggtgaacggattaagccaccaaccgtgataattgaaggcaagagatgtacatttcaccctcaaccacctgtaagttaccgacttaattttatccacaa 42450723  T
Q  217 cctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaac 293  Q
    ||||||||| ||||||||||||  |||| ||    || ||||||||||| |||||||||| ||| ||||||||||||    
T  42450724 cctgcataattgagcattctttcgcattgaaagttctattatttctttctttccatattttccatactgttgcaaac 42450800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 280
Target Start/End: Original strand, 34703463 - 34703642
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagac 200  Q
    |||||| ||| ||| ||||||||||| ||| |||||||| |||||| | ||||||||||  |  ||||| ||| ||||||||||||| |||||  | |||    
T  34703463 ttagcctatgtccaacatggtgaacgaacttagccaccaaccatgaaagttaaagggaagagttgcatatttcgccttcaaccacataaaagtgagggac 34703562  T
Q  201 ttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttccca 280  Q
    |||||||| ||||| ||||| | ||| ||||||  | || |  | ||| || ||||||||||||| ||||||||||||||    
T  34703563 ttaatcttatcaaccacctgaagaaccgagcatgttctatctgtgaataacatgttatttctttctttccatatttccca 34703642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 295
Target Start/End: Complemental strand, 44675206 - 44675019
Alignment:
Q  108 atgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatct 207  Q
    ||||||| |||| | ||||||||||||||||| ||||||||||| |||||||  |||||| | ||| |||||||||||||||| |   | | ||||||||    
T  44675206 atgcccaacatgataaacggactaagccaccaaccatgataattgaagggaagggaagcaaatttcgccttcaaccacatgaatgcaagtggcttaatct 44675107  T
Q  208 tgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    | ||||| || ||||  |  ||||||||||  ||||| ||| ||||||||||| |||| ||  | ||||| || || |||||||||||    
T  44675106 tatcaaccacttgcacgatcgagcattcttagccattgaataacctgttatttatttctttataaatttctcacacagttgcaaacca 44675019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 280
Target Start/End: Complemental strand, 15259518 - 15259337
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagac 200  Q
    |||||| |||||||| ||||| |||||||||||| |||||||||| ||||| | |||||  |||  ||||||| ||||||||||| | ||||   | ||     
T  15259518 ttagcctatgcccagtatggtaaacggactaagctaccacccatggtaattgaggggaagagaaatatacttcgccttcaaccacgtaaaagcaagcgat 15259419  T
Q  201 ttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacc--tgttatttctttccttccatatttccca 280  Q
    ||||||||||| || |||||  |||| || |||| |||  |||||||| |||  | |  |||||||||||||||||||||||    
T  15259418 ttaatcttgtcgaccacctgattaaccgaacattatttgacattaaataacctatatggtttctttccttccatatttccca 15259337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 283
Target Start/End: Original strand, 27363736 - 27363918
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagac 200  Q
    |||||| |||||||  ||||| ||||||||||||||| ||||||| ||||| | || ||  ||||  |||||| |||||||||||   || |   | |||    
T  27363736 ttagcctatgcccaaaatggtaaacggactaagccacaacccatggtaattgagggaaagagaagagtacttcgccttcaaccacgaaaaggcaagcgac 27363835  T
Q  201 ttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaac 283  Q
    |||||||| || || |||||   |||||||||||||||  |||||||  | || || ||||||||||||||||||||||||||    
T  27363836 ttaatcttatcgaccacctgataaactgagcattctttggcattaaacaatctattgtttctttccttccatatttcccaaac 27363918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 36098601 - 36098659
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaa 159  Q
    |||||| ||||||| |||||||||||||||||||||||| ||||||||||| |||||||    
T  36098601 ttagcctatgcccaacatggtgaacggactaagccaccagccatgataattgaagggaa 36098659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 220
Target Start/End: Original strand, 6723692 - 6723811
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagac 200  Q
    |||||| || || |||||||||||||||||||||||||| |||||| |||| || |||   | |  | ||||||||||||||||||| |||||  | |||    
T  6723692 ttagcctattccaagcatggtgaacggactaagccaccatccatgaaaattgaaaggaggagtattaaacttcaccttcaaccacataaaagtgagggac 6723791  T
Q  201 ttaatcttgtcaacaacctg 220  Q
    ||||||||||| || |||||    
T  6723792 ttaatcttgtcgaccacctg 6723811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 284
Target Start/End: Complemental strand, 32160187 - 32160004
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagac 200  Q
    |||||||||||| |  ||||| ||||||||||||||||||| ||| ||||| |||| ||  |||  | |||||  | |||||||| | ||||   | |||    
T  32160187 ttagccaatgcctaaaatggtaaacggactaagccaccaccaatggtaattgaaggaaagagaaataaacttcgtcctcaaccacgtaaaagcaagcgac 32160088  T
Q  201 ttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaact 284  Q
    |||||||| || |  ||||| ||||| ||||| |||||  |||| ||  |||| || |||||||||||||||||||||||||||    
T  32160087 ttaatcttatcgatcacctggataaccgagcaatctttgacattgaacaacctattgtttctttccttccatatttcccaaact 32160004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 225
Target Start/End: Complemental strand, 12688274 - 12688172
Alignment:
Q  123 aacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatcttgtcaacaacctgca 222  Q
    ||||||||||||||||| |||||||| ||||||||||  |  | | ||||||||||||||||| | |||||| |  |||||||||| || || |||||||    
T  12688274 aacggactaagccaccatccatgatagttaaagggaagagttggaaacttcaccttcaaccacttaaaagttagcaacttaatcttatccaccacctgca 12688175  T
Q  223 taa 225  Q
    |||    
T  12688174 taa 12688172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 48973747 - 48973677
Alignment:
Q  123 aacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagt 193  Q
    |||||||||||||||||||||||||||||||||||||  |   || |||||||||| |||||| |||||||    
T  48973747 aacggactaagccaccacccatgataattaaagggaagagttacaaacttcacctttaaccacttgaaagt 48973677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 280
Target Start/End: Complemental strand, 31069758 - 31069584
Alignment:
Q  106 caatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaat 205  Q
    |||||| || ||| || |||||| ||| | |||| ||||||||||| || ||||  || ||| | ||| |||||||||||||||| |     ||||||||    
T  31069758 caatgctcaacatagtaaacggattaaactaccatccatgataatttaatggaagagaggcaaatttcgccttcaaccacatgaaggaaaatgacttaat 31069659  T
Q  206 cttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttccca 280  Q
    |||||| || ||||| |  | ||||  |||||||||||||||| || |||||| |||||| ||||| ||||||||    
T  31069658 cttgtctaccacctgtaatattgagacttctttaccattaaataacatgttatatctttctttccaaatttccca 31069584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 28442151 - 28442236
Alignment:
Q  126 ggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatcttgtc 211  Q
    |||||||||||||| |||||||| ||||||||||  ||  || |||||||||||||||||  ||||||| |  ||||||| |||||    
T  28442151 ggactaagccaccaaccatgatagttaaagggaagagagacaaacttcaccttcaaccactggaaagttagcaacttaatgttgtc 28442236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 42476279 - 42476239
Alignment:
Q  255 ttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  42476279 ttatttctttctttccatatttcccacactgttgcaaacca 42476239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 295
Target Start/End: Original strand, 44889203 - 44889246
Alignment:
Q  252 ctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    |||||||||||||| ||||||||||||||||| || ||||||||    
T  44889203 ctgttatttctttctttccatatttcccaaacagtagcaaacca 44889246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 4889549 - 4889479
Alignment:
Q  120 gtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaa 190  Q
    ||||| |||||||| |||||||||||||| ||||||||||  ||||   ||||| |||| |||||||||||    
T  4889549 gtgaatggactaagtcaccacccatgatagttaaagggaagagaagggaacttcgccttgaaccacatgaa 4889479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 9484956 - 9484878
Alignment:
Q  108 atgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccaca 186  Q
    ||||||| ||| |||||| |||||| |||||| ||||||||||| |||||||  ||| || | ||| ||||||||||||    
T  9484956 atgcccaacattgtgaactgactaaaccaccaaccatgataattgaagggaagagaaacaaatttcgccttcaaccaca 9484878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 5595004 - 5594963
Alignment:
Q  233 ttctttaccattaaattacctgttatttctttccttccatat 274  Q
    |||||||||||||||| ||| || ||||||||||||||||||    
T  5595004 ttctttaccattaaataacccgtcatttctttccttccatat 5594963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 5411835 - 5411767
Alignment:
Q  123 aacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaa 191  Q
    |||||||||||||| || |||||||| ||||||||||  |   || ||||||||||||||||| |||||    
T  5411835 aacggactaagccaacaaccatgatagttaaagggaagagttacaaacttcaccttcaaccacttgaaa 5411767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 33134338 - 33134298
Alignment:
Q  255 ttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    ||||||||||| ||||||||||||||||| || ||||||||    
T  33134338 ttatttctttctttccatatttcccaaacagtagcaaacca 33134298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 51800518 - 51800474
Alignment:
Q  251 cctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    ||||||||||||||| |||||||||||||| ||| | ||||||||    
T  51800518 cctgttatttctttctttccatatttcccacactatagcaaacca 51800474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 101 - 295
Target Start/End: Original strand, 19314984 - 19315178
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagac 200  Q
    |||||| ||||| |||||||| ||||| ||||||||||| |||||||||||  |||||| | ||||| | ||| ||||||||||||| || ||  | |||    
T  19314984 ttagcctatgcctagcatggtaaacgggctaagccaccaaccatgataattccagggaaataaagcaaatttcgccttcaaccacataaatgtgagtgac 19315083  T
Q  201 ttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    |||||||| ||||| |||||||| || || |||||||| || || ||| |||||||||||||||| ||||| ||||||||||| || ||||||||    
T  19315084 ttaatcttatcaaccacctgcattaccgaccattctttgcctttgaataacctgttatttctttctttccaaatttcccaaacggtagcaaacca 19315178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 101 - 283
Target Start/End: Original strand, 27482652 - 27482834
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagac 200  Q
    |||||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||| || | | || |||||||||||||||   || |   | |||    
T  27482652 ttagcctatgcccaacatggtgaacggactaagccaccagccatgataattgaagggaagtgtaacgtatttcaccttcaaccaccaaaaggcgagggac 27482751  T
Q  201 ttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaac 283  Q
    |||||||| ||||| ||||| || || |||||||||||| |||||||  |||||||||||||||| ||||| |||| ||||||    
T  27482752 ttaatcttatcaaccacctgaattaccgagcattctttatcattaaacaacctgttatttctttctttccaaattttccaaac 27482834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 101 - 295
Target Start/End: Original strand, 704496 - 704690
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagac 200  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || ||||   ||||| ||||  ||||||||||    |||||  || ||    
T  704496 ttagccaatgcccagtatggtaaacggactaagtcaccacccatgataattgaatggaagaaaagcaaactttgccttcaaccaagcaaaagtaagaaac 704595  T
Q  201 ttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    |||||||| || |  ||| | ||||| || || |||||| | |||||  | |||||||||||||||||||||||||| |||||||| ||||||||    
T  704596 ttaatcttatctatcacccgaataaccgaacaatctttaacgttaaacaatctgttatttctttccttccatatttctcaaactgtagcaaacca 704690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 101 - 284
Target Start/End: Original strand, 31706406 - 31706589
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagac 200  Q
    |||||| |||||||  ||||| ||||||||||||||||||||||| ||||| | |||||  |||  ||||||| |||| |||||| | ||||   | |||    
T  31706406 ttagcctatgcccaatatggtaaacggactaagccaccacccatggtaattgaggggaagagaaatatacttcgcctttaaccacgtaaaagcaagcgac 31706505  T
Q  201 ttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaact 284  Q
    ||||||||||| || ||||| |||||  | || |||||  |||||||   ||| || |||||||||||||||||||||||||||    
T  31706506 ttaatcttgtcgaccacctggataaccaaacaatctttgacattaaacagcctattgtttctttccttccatatttcccaaact 31706589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 265
Target Start/End: Original strand, 26778700 - 26778864
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagac 200  Q
    |||||| ||| | |||||||| |||||||||| |||||| ||||||||||| |||| ||  |||  | | |||||||||||||||||||| | | |||||    
T  26778700 ttagcctatgtcgagcatggtaaacggactaaaccaccaaccatgataattgaaggaaagagaaaaaaatttcaccttcaaccacatgaatgctagagac 26778799  T
Q  201 ttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttc 265  Q
    |||||||||| ||| |||| || ||  |   ||||| | ||||||||| |||| |||||||||||    
T  26778800 ttaatcttgttaaccacctacacaatcggatattctctgccattaaataacctattatttctttc 26778864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 276
Target Start/End: Complemental strand, 18967970 - 18967796
Alignment:
Q  102 tagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagact 201  Q
    |||||||||||||||||  | || ||||||||||| || ||||||| |||||| ||||  |||||| | ||| ||||||||||||| ||||   | ||||    
T  18967970 tagccaatgcccagcataataaatggactaagccatcatccatgatcattaaatggaagagaagcaaatttcgccttcaaccacataaaagaaagtgact 18967871  T
Q  202 taatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatattt 276  Q
    |||||||||| |   |||  |  |  ||||||||||||||||||||| | ||||||||| |||| ||||| ||||    
T  18967870 taatcttgtctatctcctataatatcgagcattctttaccattaaataatctgttatttatttctttccaaattt 18967796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 16610686 - 16610602
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccac 185  Q
    |||||||||||| |  ||||| ||||||||||||||||||||||||||||| |||||||  ||| || |||||  ||||||||||    
T  16610686 ttagccaatgcctaaaatggtaaacggactaagccaccacccatgataattgaagggaagagaaacaaacttcgtcttcaaccac 16610602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 29651780 - 29651830
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataatt 151  Q
    |||||| ||||||| |||||| |||||||||||||||||||||||||||||    
T  29651780 ttagcctatgcccaacatggtaaacggactaagccaccacccatgataatt 29651830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 32017992 - 32018058
Alignment:
Q  128 actaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtt 194  Q
    |||||||||||| |||||||||||||||||||    |||||||| ||||||||||||| ||||||||    
T  32017992 actaagccaccaaccatgataattaaagggaaggttagcatactgcaccttcaaccacttgaaagtt 32018058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 7465322 - 7465257
Alignment:
Q  120 gtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccac 185  Q
    ||||| ||||||  |||||| |||||||||||||||||||  || |||||||||||||||||||||    
T  7465322 gtgaaaggactagaccaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccac 7465257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 25942590 - 25942715
Alignment:
Q  95 taacagttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtt 194  Q
    ||||| ||| |||||||| || ||||||||||||||||||||||| |||| |||||| || ||||     || || ||| | |||||||| |||||||||    
T  25942590 taacaattaaccaatgcctagaatggtgaacggactaagccaccaaccataataattgaacggaagattggcgtatttctctttcaaccatatgaaagtt 25942689  T
Q  195 tgagacttaatcttgtcaacaacctg 220  Q
       ||||||||||||||||| |||||    
T  25942690 gtcgacttaatcttgtcaaccacctg 25942715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 120 - 280
Target Start/End: Original strand, 7961144 - 7961304
Alignment:
Q  120 gtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatcttgtcaacaacct 219  Q
    ||||||| |||||||||||| |||||||| |||||  |||  | |||||||||| ||||||||||| |||| ||| |  |||||||| | || || ||||    
T  7961144 gtgaacgaactaagccaccaaccatgatagttaaaatgaagagtagcatacttcgccttcaaccacttgaatgttagcaacttaatcctatccaccacct 7961243  T
Q  220 gcataactgagcattctttaccattaaattacctgttatttctttccttccatatttccca 280  Q
    ||||||  | ||  || ||| |||||||     |||| |||||||||||||||||||||||    
T  7961244 gcataatggcgctatcattagcattaaaaattatgttgtttctttccttccatatttccca 7961304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 21042045 - 21042009
Alignment:
Q  123 aacggactaagccaccacccatgataattaaagggaa 159  Q
    |||||||||||||||||||||||||||||||||||||    
T  21042045 aacggactaagccaccacccatgataattaaagggaa 21042009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 39840007 - 39839933
Alignment:
Q  116 catggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaa 190  Q
    ||||||||| |||||||||||||| |||||||| ||||||||||  || | | |||||  |||||||||||||||    
T  39840007 catggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgtcttcaaccacatgaa 39839933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 8488014 - 8487974
Alignment:
Q  255 ttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  8488014 ttatttctttctttccatatttcccacactgttgcaaacca 8487974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 12831501 - 12831552
Alignment:
Q  108 atgcccagcatggtgaacggactaagccaccacccatgataattaaagggaa 159  Q
    ||||||| ||| |||||||||||||||||||| |||||| |||| |||||||    
T  12831501 atgcccaacatagtgaacggactaagccaccaaccatgaaaattgaagggaa 12831552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 12863476 - 12863527
Alignment:
Q  108 atgcccagcatggtgaacggactaagccaccacccatgataattaaagggaa 159  Q
    ||||||| ||| |||||||||||||||||||| |||||| |||| |||||||    
T  12863476 atgcccaacatagtgaacggactaagccaccaaccatgaaaattgaagggaa 12863527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 194
Target Start/End: Complemental strand, 29994714 - 29994643
Alignment:
Q  123 aacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtt 194  Q
    |||||| |||||||||| ||||||||||| |||||||   ||| | ||||||||||||||||| | ||||||    
T  29994714 aacggattaagccaccaaccatgataattgaagggaagaaaaggaaacttcaccttcaaccacttaaaagtt 29994643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 298
Target Start/End: Complemental strand, 34177663 - 34177620
Alignment:
Q  255 ttatttctttccttccatatttcccaaactgttgcaaaccatat 298  Q
    ||||||||||||||||||||||| || || ||||||||||||||    
T  34177663 ttatttctttccttccatatttcacacaccgttgcaaaccatat 34177620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 22922505 - 22922610
Alignment:
Q  175 ccttcaaccacatgaaagtttgagacttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatat 274  Q
    ||||||||||| | ||||   ||||||||||||| || || ||||| | ||  |||||||||||| |||||||    ||||||||||| |||||||||||    
T  22922505 ccttcaaccacgtaaaagcaagagacttaatcttctctaccacctgtaaaatagagcattctttatcattaaaaagtctgttatttctctccttccatat 22922604  T
Q  275 ttccca 280  Q
     |||||    
T  22922605 ctccca 22922610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 22923148 - 22923253
Alignment:
Q  175 ccttcaaccacatgaaagtttgagacttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatat 274  Q
    ||||||||||| | ||||   ||||||||||||| || ||  |||| | ||| |||||||||||| |||||||    ||||||||||| |||||||||||    
T  22923148 ccttcaaccacgtaaaagcaagagacttaatcttctctaccgcctgtaaaacagagcattctttatcattaaaaagtctgttatttctctccttccatat 22923247  T
Q  275 ttccca 280  Q
     |||||    
T  22923248 ctccca 22923253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 108 - 295
Target Start/End: Original strand, 17292754 - 17292940
Alignment:
Q  108 atgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatct 207  Q
    |||||||||||| | |||||||||||||| || ||||||||||| |||||||  |||||| | ||  | |||||||||||||| | | ||||||||||||    
T  17292754 atgcccagcatgataaacggactaagccatcaaccatgataattgaagggaagagaagcaaatttggcgttcaaccacatgaatgctagagacttaatct 17292853  T
Q  208 tgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    |    || ||||||||||  || |||||||| |||||||| ||| ||||||||||||| ||||| |||||||| || |||||||||||    
T  17292854 taatgaccacctgcataatcgatcattctttgccattaaa-tacatgttatttctttctttccaaatttcccatacggttgcaaacca 17292940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 283
Target Start/End: Original strand, 7824113 - 7824300
Alignment:
Q  96 aacagttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagttt 195  Q
    |||| |||||| |||||||  ||||||||||| ||||||||||||||||| ||||| | |||||  || | ||||||| ||||||||||| | || |       
T  7824113 aacacttagcctatgcccaaaatggtgaacgggctaagccaccacccatggtaattgaggggaagagaggaatacttcgccttcaaccacgtaaaggcaa 7824212  T
Q  196 gagacttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaac 283  Q
    | |||||||||||||| || |||||  |||| |||||||||||  |||||||   ||| || ||||||||||||||||||||||||||    
T  7824213 gcgacttaatcttgtcgaccacctgattaaccgagcattctttgacattaaacagcctattgtttctttccttccatatttcccaaac 7824300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 295
Target Start/End: Original strand, 29599171 - 29599342
Alignment:
Q  123 aacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatcttgtcaacaacctgca 222  Q
    ||||| ||||||||||| ||||  ||||| |||||||  ||||| || ||||||||||||||||||| || |  ||||||||||||||| || |||||||    
T  29599171 aacgggctaagccaccaaccatagtaattgaagggaagagaagcgtatttcaccttcaaccacatgacagctacagacttaatcttgtctaccacctgca 29599270  T
Q  223 taactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
     ||  || |||| ||| ||||||||| || | ||||||||||| ||||| |||||||| ||  ||||||||||    
T  29599271 caatcgaacatt-ttttccattaaataacttattatttctttctttccaaatttcccacacgcttgcaaacca 29599342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 101 - 284
Target Start/End: Original strand, 32196798 - 32196981
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagac 200  Q
    |||||||||||| |  ||||| |||||||||||||| |||||||| ||||| |||||||  |||  | |||||  |||||||||  | |||||  | |||    
T  32196798 ttagccaatgcctaaaatggtaaacggactaagccatcacccatgttaattgaagggaagagaactaaacttcgtcttcaaccatgtaaaagtaagcgac 32196897  T
Q  201 ttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaact 284  Q
    ||||||| ||| || ||||| ||||| || || |||||  |||||||  |||| || |||||||||||||||||||||||||||    
T  32196898 ttaatctggtcgaccacctggataaccgaacaatctttgacattaaacaacctattgtttctttccttccatatttcccaaact 32196981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 280
Target Start/End: Complemental strand, 9907282 - 9907097
Alignment:
Q  95 taacagttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtt 194  Q
    ||||| |||||| ||||| |  |||||||| ||| ||||||||||| |||||||||| |||||||| ||||  || ||| ||||||||||||||||||      
T  9907282 taacaattagcctatgcctaaaatggtgaatggattaagccaccacgcatgataattgaagggaatagaagggtatttctccttcaaccacatgaaagcg 9907183  T
Q  195 tgagacttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttccca 280  Q
     | |||||||| || || || |||||   ||  |||   || || ||||||||| |||||||||||||||| ||||| ||||||||    
T  9907182 agcgacttaattttatctaccacctgaggaatagaggtatccttgccattaaataacctgttatttctttctttccaaatttccca 9907097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 295
Target Start/End: Complemental strand, 11324584 - 11324391
Alignment:
Q  102 tagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagact 201  Q
    ||||| |||||||  ||||  ||||||||||||||||||||||||||||| |||||||  |||||| | ||| ||||||||||| | ||||   |  |||    
T  11324584 tagcctatgcccataatggcaaacggactaagccaccacccatgataattgaagggaagagaagcaaatttcgccttcaaccacgtaaaagcaagcaact 11324485  T
Q  202 taatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    |||||||||| || | ||| | ||| |||||  ||||  |||| ||   ||||||||||||||||||||| |||| ||| || || ||||||||    
T  11324484 taatcttgtctaccatctgaagaaccgagcaaactttgtcattgaagagcctgttatttctttccttccaaattttccacaccgtagcaaacca 11324391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 220
Target Start/End: Complemental strand, 2682873 - 2682761
Alignment:
Q  108 atgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatct 207  Q
    |||| |||||||||||| |||||||||||||| |||||| |||| ||| |||| | || | | ||||||||||||||| | ||||   | ||||||||||    
T  2682873 atgctcagcatggtgaaaggactaagccaccaaccatgacaattgaagagaatagtaggaaatttcaccttcaaccacctaaaagcaagggacttaatct 2682774  T
Q  208 tgtcaacaacctg 220  Q
    |||| ||||||||    
T  2682773 tgtcgacaacctg 2682761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 280
Target Start/End: Complemental strand, 18672152 - 18671974
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagac 200  Q
    |||||| ||||| || | |||||||||||| |||||||| |||||||| ||||||||||  | || ||||||||||||||||||| |  ||||| |  ||    
T  18672152 ttagcctatgcctagtaaggtgaacggactcagccaccaaccatgatagttaaagggaagagtag-atacttcaccttcaaccacttataagttagcaac 18672054  T
Q  201 ttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttccca 280  Q
    ||||||||||| ||  |||| |||| |||||  |||||  |||||||     ||||| | ||||||||||| ||||||||    
T  18672053 ttaatcttgtccaccccctgaataattgagctatcttttgcattaaaaattatgttaatcctttccttccaaatttccca 18671974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 32533064 - 32533134
Alignment:
Q  120 gtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaa 190  Q
    |||||||||||||||||||| |||||||| ||||||||||  | |||| |||||| |||||||||| ||||    
T  32533064 gtgaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaa 32533134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 15117251 - 15117316
Alignment:
Q  120 gtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccac 185  Q
    ||||| ||||||  |||||| |||||||||||||||||||  | ||||||||||||||||||||||    
T  15117251 gtgaaaggactactccaccaaccatgataattaaagggaagagtagcatacttcaccttcaaccac 15117316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 280
Target Start/End: Original strand, 14216076 - 14216180
Alignment:
Q  176 cttcaaccacatgaaagtttgagacttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatt 275  Q
    ||||||||||||||| ||  | |||||||  || ||||  ||||||| || |||||||||||| |||||||||  ||| ||||| ||||| |||||||||    
T  14216076 cttcaaccacatgaacgtcagcgacttaactttatcaatcacctgcacaattgagcattctttgccattaaataccctattattcctttctttccatatt 14216175  T
Q  276 tccca 280  Q
    |||||    
T  14216176 tccca 14216180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 34018116 - 34018168
Alignment:
Q  228 gagcattctttaccattaaattacctgttatttctttccttccatatttccca 280  Q
    ||||| ||||||||||||||   ||||||||||||||||||||||||||||||    
T  34018116 gagcaatctttaccattaaaaatcctgttatttctttccttccatatttccca 34018168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 295
Target Start/End: Original strand, 5667497 - 5667540
Alignment:
Q  252 ctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    |||||||| ||||||||||| |||||||||||||||||||||||    
T  5667497 ctgttattcctttccttccaaatttcccaaactgttgcaaacca 5667540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 12688311 - 12688247
Alignment:
Q  95 taacagttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaa 159  Q
    ||||| |||||| ||||||| ||| | |||||||||||||||||| |||||  ||||||||||||    
T  12688311 taacaattagcctatgcccaacattgcgaacggactaagccaccagccatgtaaattaaagggaa 12688247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 31454171 - 31454211
Alignment:
Q  251 cctgttatttctttccttccatatttcccaaactgttgcaa 291  Q
    ||||||||||||||| |||||||||||||||||||| ||||    
T  31454171 cctgttatttctttctttccatatttcccaaactgtagcaa 31454211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 22469524 - 22469449
Alignment:
Q  117 atggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaag 192  Q
    |||||||| ||||||||||||||  |||||||||| |||||||  ||||  || ||  ||||||||||||||||||    
T  22469524 atggtgaatggactaagccaccaagcatgataattgaagggaagagaagggtatttatccttcaaccacatgaaag 22469449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 186
Target Start/End: Complemental strand, 27105395 - 27105304
Alignment:
Q  95 taacagttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccaca 186  Q
    ||||| |||||| |||||||  ||  |||||||| |||||||||| |||||  ||||||||||||| | || | ||||| ||||||||||||    
T  27105395 taacaattagcctatgcccaatattttgaacggattaagccaccagccatgtaaattaaagggaatagtagtaaacttctccttcaaccaca 27105304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 186
Target Start/End: Complemental strand, 27147204 - 27147113
Alignment:
Q  95 taacagttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccaca 186  Q
    ||||| |||||| |||||||  ||  |||||||| |||||||||| |||||  ||||||||||||| | || | ||||| ||||||||||||    
T  27147204 taacaattagcctatgcccaatattttgaacggattaagccaccagccatgtaaattaaagggaatagtagtaaacttctccttcaaccaca 27147113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 95 - 283
Target Start/End: Original strand, 8462488 - 8462675
Alignment:
Q  95 taacagttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtt 194  Q
    ||||| |||||| |||  || |||||| ||| ||||||||||||| ||||||||||| |||||||  |||||| | ||| |||||||||||||||| ||     
T  8462488 taacaattagcctatgttcatcatggtaaacagactaagccaccaaccatgataattgaagggaagagaagcaaatttcgccttcaaccacatgaatgtg 8462587  T
Q  195 tgagacttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaac 283  Q
     | ||||||||||| ||||| ||||||| ||| || |||||||| || || || || |||||||||||||| ||| | |||||||||||    
T  8462588 agtgacttaatcttatcaaccacctgcacaaccgaacattctttgcctttgaa-tatctgttatttctttctttctaaatttcccaaac 8462675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 101 - 295
Target Start/End: Original strand, 39435435 - 39435628
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagac 200  Q
    |||||| ||| |||| | ||||||| |||| | |||||| |||||||||| ||||| ||  |||||| | ||| ||||||||||||||||     | |||    
T  39435435 ttagcctatgtccagaaaggtgaacagactcaaccaccaaccatgataatgaaagg-aagagaagcaaatttcgccttcaaccacatgaactcgagtgac 39435533  T
Q  201 ttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    |||||||| ||||| ||||||| ||| |||||||||||  |||| ||| || ||||||||||||| ||||| ||||| || ||  ||||||||||    
T  39435534 ttaatcttatcaaccacctgcaaaaccgagcattctttgtcattgaataacatgttatttctttctttccaaatttctcacacacttgcaaacca 39435628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 295
Target Start/End: Original strand, 33191203 - 33191377
Alignment:
Q  120 gtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatcttgtcaacaacct 219  Q
    |||||||||||||||||||| ||||||||||| |||||||  | | || | |||| |||||||||| || | |||    ||||||||| ||| || || |    
T  33191203 gtgaacggactaagccaccaaccatgataattgaagggaagagtatcaaatttcaacttcaaccacgtgtatgttaacaacttaatct-gtccaccacgt 33191301  T
Q  220 gcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    ||||||  ||||| |||||  |||| ||  |  |||  ||||||||||||||||||||||||| ||||||||||||    
T  33191302 gcataatagagcaatcttttgcattgaaaaatttgtcgtttctttccttccatatttcccaaattgttgcaaacca 33191377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 38233301 - 38233236
Alignment:
Q  120 gtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccac 185  Q
    ||||| ||||||  |||||| |||||||||||||||||||  || |||||||||||||||||||||    
T  38233301 gtgaaaggactagaccaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccac 38233236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 38685859 - 38685794
Alignment:
Q  120 gtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccac 185  Q
    ||||||||||||| |||||| |||||||| ||||||||||  | |||||||||||||||| |||||    
T  38685859 gtgaacggactaatccaccaaccatgatagttaaagggaagagtagcatacttcaccttcgaccac 38685794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 41255039 - 41255107
Alignment:
Q  122 gaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaa 190  Q
    |||||||||||||||||| |||||||| ||||||||||   ||||||| || |||||||||||| ||||    
T  41255039 gaacggactaagccaccaaccatgatagttaaagggaagataagcatagttaaccttcaaccacttgaa 41255107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 37929207 - 37929141
Alignment:
Q  119 ggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccac 185  Q
    ||||||||||||||||||||| |||||||| ||||||||||  | || | | |||||||||||||||    
T  37929207 ggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 37929141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 295
Target Start/End: Original strand, 31686427 - 31686603
Alignment:
Q  119 ggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatcttgtcaacaacc 218  Q
    ||||||||||||||||| ||||||||| || ||||||||||  | || | | ||| ||||||||||| | ||||   ||||||||||  | || || |||    
T  31686427 ggtgaacggactaagccgccacccatggtagttaaagggaagagtaggaaatttctccttcaaccacctaaaagcgcgagacttaattctatcgaccacc 31686526  T
Q  219 tgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    ||  | | | |||||  |||  | ||||| |  |||||||||||||| ||||| |||||||||||||| ||||||||    
T  31686527 tgacttattaagcatattttgtcgttaaaatgtctgttatttctttctttccagatttcccaaactgtcgcaaacca 31686603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 5048597 - 5048546
Alignment:
Q  108 atgcccagcatggtgaacggactaagccaccacccatgataattaaagggaa 159  Q
    |||||||| ||||||||||||||||||||||| |||||| | || |||||||    
T  5048597 atgcccagtatggtgaacggactaagccaccaaccatgaaagttgaagggaa 5048546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 10617001 - 10616932
Alignment:
Q  122 gaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaa 191  Q
    ||||| |||||||||||| |||||||| || || ||||| | |||| ||||||||| ||||||| |||||    
T  10617001 gaacgaactaagccaccaaccatgatagttgaaaggaatagtagcaaacttcacctccaaccacttgaaa 10616932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 7179036 - 7179104
Alignment:
Q  126 ggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtt 194  Q
    ||||||||||||||  ||||||| ||||||||||  |   || ||||||||||||||||| ||||||||    
T  7179036 ggactaagccaccaatcatgatagttaaagggaagagttacaaacttcaccttcaaccacttgaaagtt 7179104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 37929075 - 37929031
Alignment:
Q  251 cctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    ||||||||||||||| |||||  ||||||||||||| ||||||||    
T  37929075 cctgttatttctttctttccaggtttcccaaactgtcgcaaacca 37929031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 43776182 - 43776142
Alignment:
Q  255 ttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    ||||||||||| ||||| |||||||| ||||||||||||||    
T  43776182 ttatttctttctttccaaatttcccacactgttgcaaacca 43776142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 284
Target Start/End: Complemental strand, 47543544 - 47543361
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagac 200  Q
    |||||||||||| |  ||||| |||||||||||||| |||||||||||||| |||||||  |||  | |||||  |||||||||| | ||||   | |||    
T  47543544 ttagccaatgcctaaaatggtaaacggactaagccatcacccatgataattgaagggaagagaactaaacttcgtcttcaaccacgtaaaagcaagcgac 47543445  T
Q  201 ttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaact 284  Q
    ||||||||||| || ||||| ||||| || || |||||  |||||||  |||| || |||||||||||||||||||||||||||    
T  47543444 ttaatcttgtcgaccacctggataaccgaacaatctttgacattaaacaacctattgtttctttccttccatatttcccaaact 47543361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 282
Target Start/End: Original strand, 17116400 - 17116565
Alignment:
Q  117 atggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagacttaatcttgtcaacaa 216  Q
    ||||| ||| ||||||||||||| ||||||||| | |||||||  |||||||| ||| ||||||||||||| || |   | ||||||||||| ||||| |    
T  17116400 atggtaaacagactaagccaccaaccatgataactgaagggaagagaagcatatttcgccttcaaccacataaatgcgagtgacttaatcttatcaacca 17116499  T
Q  217 cctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaa 282  Q
    | || || || ||||| ||||| || || ||| |||||||||||||||| ||||| ||||| ||||    
T  17116500 cttgtattaccgagcaatctttgcctttgaataacctgttatttctttctttccaaatttctcaaa 17116565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 96 - 283
Target Start/End: Complemental strand, 10315194 - 10315007
Alignment:
Q  96 aacagttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagttt 195  Q
    |||| |||||| |||||||  || || ||||| |||||||||||||| || ||||| | |||||  || | ||||||||||||||||||  | || |       
T  10315194 aacacttagcctatgcccaaaatagtaaacgggctaagccaccacccgtggtaattgaggggaagagaggaatacttcaccttcaaccatgtaaaggcaa 10315095  T
Q  196 gagacttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaac 283  Q
    | |||||||||||||| || |||||  |||| |||||||||||  |||||||   ||| || |||||||||||||| |||||||||||    
T  10315094 gcgacttaatcttgtctaccacctgattaaccgagcattctttgacattaaacagcctattgtttctttccttccaaatttcccaaac 10315007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 40616734 - 40616804
Alignment:
Q  120 gtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaa 190  Q
    |||||||||||||||||||| ||| |||| ||||||||||  | |||||||||||||||||||||| ||||    
T  40616734 gtgaacggactaagccaccaaccaagatagttaaagggaagagtagcatacttcaccttcaaccacttgaa 40616804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 34237272 - 34237213
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaat 160  Q
    |||||| ||||||| ||||||||| |||||||||||||| ||||||||||| ||||||||    
T  34237272 ttagcctatgcccaacatggtgaaaggactaagccaccaaccatgataattgaagggaat 34237213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 295
Target Start/End: Complemental strand, 9628301 - 9628124
Alignment:
Q  117 atggtgaacggactaagccaccacccatgataattaaagggaa--ttgaagcatacttcaccttcaaccacatgaaagtttgagacttaatcttgtcaac 214  Q
    ||||| ||||||||||||||||| ||||| ||||| |||||||  |||| | ||  ||| | ||||||||||||||||||   |||||||||||||||||    
T  9628301 atggtaaacggactaagccaccaaccatggtaattgaagggaagattgacgtat--ttccctttcaaccacatgaaagttgtcgacttaatcttgtcaac 9628204  T
Q  215 aacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
     ||| |   || ||| |||| |||  |||| ||   |||||||||||| || ||||| |||||||| ||||||||||||||    
T  9628203 caccggttgaattgaacatt-tttgtcattgaagaccctgttatttctctctttccaaatttcccacactgttgcaaacca 9628124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 26569824 - 26569739
Alignment:
Q  102 tagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacat 187  Q
    ||||||||||||| ||| ||||||||||  |||||||| ||||||||||| |||||||  ||||||   ||| |||||||||||||    
T  26569824 tagccaatgcccaacatagtgaacggacatagccaccatccatgataattgaagggaagagaagcaagtttcgccttcaaccacat 26569739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 27854972 - 27854911
Alignment:
Q  129 ctaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaa 190  Q
    ||||||||||| |||||||| ||||||||||  | |||||||||||||||||||||| ||||    
T  27854972 ctaagccaccaaccatgatagttaaagggaagggtagcatacttcaccttcaaccacttgaa 27854911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 16560079 - 16560015
Alignment:
Q  231 cattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    |||||||| ||||| ||| |||||||||||||||| |||||||||||||| || || ||||||||    
T  16560079 cattcttttccattgaataacctgttatttctttctttccatatttcccacaccgtagcaaacca 16560015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 16605583 - 16605647
Alignment:
Q  231 cattctttaccattaaattacctgttatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    |||||||| ||||| ||| |||||||||||||||| |||||||||||||| || || ||||||||    
T  16605583 cattcttttccattgaataacctgttatttctttctttccatatttcccacaccgtagcaaacca 16605647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 280
Target Start/End: Complemental strand, 40348029 - 40347918
Alignment:
Q  169 acttcaccttcaaccacatgaaagtttgagacttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttcctt 268  Q
    ||||| |||||||||||||||| ||  | |||||||| || || || | |||||||| || ||| ||||||||||| ||    |||||||||||||| ||    
T  40348029 acttcgccttcaaccacatgaacgtcagcgacttaattttatctaccatctgcataattgggcactctttaccattgaacagtctgttatttctttcttt 40347930  T
Q  269 ccatatttccca 280  Q
    ||||||||||||    
T  40347929 ccatatttccca 40347918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 41529501 - 41529450
Alignment:
Q  108 atgcccagcatggtgaacggactaagccaccacccatgataattaaagggaa 159  Q
    |||||||||||||||||||||||||| ||||| |||||| |||| |||||||    
T  41529501 atgcccagcatggtgaacggactaagtcaccaaccatgaaaattgaagggaa 41529450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 8566908 - 8566947
Alignment:
Q  256 tatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    |||||||||||||||| |||||||||||||| ||||||||    
T  8566908 tatttctttccttccaaatttcccaaactgtagcaaacca 8566947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 42017905 - 42017858
Alignment:
Q  101 ttagccaatgcccagcatggtgaacggactaagccaccacccatgata 148  Q
    |||||| ||||||| ||| |||||||||||||||||||| ||||||||    
T  42017905 ttagcctatgcccaacatagtgaacggactaagccaccatccatgata 42017858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 276
Target Start/End: Complemental strand, 12092793 - 12092619
Alignment:
Q  102 tagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtttgagact 201  Q
    |||| |||||||| ||| || || |||||||||||| | |||||||| || |||||||  || | | | ||| |||||||||||||||| |   | ||||    
T  12092793 tagctaatgcccaacatagtaaatggactaagccactatccatgatagtttaagggaagagaggaaaatttcgccttcaaccacatgaaggaaagtgact 12092694  T
Q  202 taatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatattt 276  Q
    ||||||| || || ||||| |  |  |||||||||||| |||| |||   |||||||||| ||||||||| ||||    
T  12092693 taatcttatctaccacctgtaagatcgagcattctttagcattgaatattctgttatttccttccttccaaattt 12092619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 16560203 - 16560163
Alignment:
Q  108 atgcccagcatggtgaacggactaagccaccacccatgata 148  Q
    ||||||||||||||||||||| ||||||||||  |||||||    
T  16560203 atgcccagcatggtgaacggattaagccaccaaacatgata 16560163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 16605459 - 16605499
Alignment:
Q  108 atgcccagcatggtgaacggactaagccaccacccatgata 148  Q
    ||||||||||||||||||||| ||||||||||  |||||||    
T  16605459 atgcccagcatggtgaacggattaagccaccaaacatgata 16605499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 95 - 277
Target Start/End: Original strand, 64262 - 64444
Alignment:
Q  95 taacagttagccaatgcccagcatggtgaacggactaagccaccacccatgataattaaagggaattgaagcatacttcaccttcaaccacatgaaagtt 194  Q
    ||||||||| || |||||||  |||||||| ||||||||||||||  |||||||||| |||| ||  ||||  || ||| |||||||||||| |||||      
T  64262 taacagttaacctatgcccaaaatggtgaaaggactaagccaccaagcatgataattgaaggaaagagaagggtatttctccttcaaccacaagaaagcg 64361  T
Q  195 tgagacttaatcttgtcaacaacctgcataactgagcattctttaccattaaattacctgttatttctttccttccatatttc 277  Q
     | |||||||| || || || |||||   || ||| |  || || ||||||||| |||||||||||||||| ||||| |||||    
T  64362 agggacttaattttatctaccacctgaggaattgaactatccttgccattaaataacctgttatttctttctttccaaatttc 64444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 6468 - 6429
Alignment:
Q  256 tatttctttccttccatatttcccaaactgttgcaaacca 295  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  6468 tatttctttccttccaaatttcccaaactgttgcacacca 6429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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