View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12071_low_24 (Length: 302)
Name: NF12071_low_24
Description: NF12071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12071_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 6 - 284
Target Start/End: Original strand, 42158297 - 42158575
Alignment:
| Q |
6 |
acattaagcaaagtaggaagagctctgctaccaacatacacatctccttccacagataaattctcataacgaacttcaatttttggaatttcaatcccca |
105 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42158297 |
acattaagaagagtaggaagagctctgctaccaacatacacatctccttccacagataaattctcataacggacttcaatttttggaatttcaatcccca |
42158396 |
T |
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| Q |
106 |
ccctatattgtattgcattgcagtcacaaatgtaaacataaccgaatcaaaaacatcatcatcatcactactnnnnnnngttgatataacaacagatatt |
205 |
Q |
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| T |
42158397 |
ccctacattgtattgcattgcagtcacaaatgtaaacataaccgaatcaaaaacatcatcatcatcactactaaaaaaagttgatataacaacagatatt |
42158496 |
T |
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| Q |
206 |
agaaactgnnnnnnntttaaattggtcacgaaatttggcatctctaacacttaacaacaaaattagaggtacatttgtc |
284 |
Q |
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| T |
42158497 |
agaaacggaaaaaaatttaaattggtcacgaaatttggcatctctaacacttaacaacaaaattagagatacatttgtc |
42158575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 42178029 - 42178166
Alignment:
| Q |
6 |
acattaagcaaagtaggaagagctctgctaccaacatacacatctccttccacagataaattctcataacgaacttcaatttttggaatttcaatcccca |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42178029 |
acattaagcaaagtaggaagagctctgctaccaacatacacatctccttccacagataaattctcataacgaacttcaatttttggaatttcaatcccca |
42178128 |
T |
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| Q |
106 |
ccctatattgtattgcattgcagtcacaaatgtaaaca |
143 |
Q |
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| T |
42178129 |
ccctatattgtattgcattgcagtcacaaatgtaaaca |
42178166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 6 - 120
Target Start/End: Original strand, 42146345 - 42146459
Alignment:
| Q |
6 |
acattaagcaaagtaggaagagctctgctaccaacatacacatctccttccacagataaattctcataacgaacttcaatttttggaatttcaatcccca |
105 |
Q |
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|||||||||| ||||||||| ||||| || ||||||| |||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
42146345 |
acattaagcagagtaggaagtgctctacttccaacatgcacatctccttccacagacaaattttcataacgtacttcaatttttggaatttcaatcccca |
42146444 |
T |
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| Q |
106 |
ccctatattgtattg |
120 |
Q |
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||||| ||||||||| |
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| T |
42146445 |
ccctacattgtattg |
42146459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 117
Target Start/End: Original strand, 42137567 - 42137650
Alignment:
| Q |
34 |
taccaacatacacatctccttccacagataaattctcataacgaacttcaatttttggaatttcaatccccaccctatattgta |
117 |
Q |
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| T |
42137567 |
taccaacatgcacatttccctccaccgatacattttcgaaccgtacttcaatttttggaatttcaatccccaccctgtattgta |
42137650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 11373372 - 11373420
Alignment:
| Q |
224 |
aaattggtcacgaaatttggcatctctaacacttaacaacaaaattaga |
272 |
Q |
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|||||||||| ||||||||||| ||||||||||| |||||||| |||| |
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| T |
11373372 |
aaattggtcatcaaatttggcatttctaacacttagcaacaaaaataga |
11373420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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