View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12071_low_30 (Length: 258)
Name: NF12071_low_30
Description: NF12071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12071_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 55 - 241
Target Start/End: Original strand, 6752677 - 6752863
Alignment:
| Q |
55 |
ataattcaggaaatacaaatgaatatgcggtcaaatttcgacaaatggggggcggaatgaccttacatgtcgatactaaacaagtgtgtttgattctgcc |
154 |
Q |
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| T |
6752677 |
ataattcaggaaatacaaatgaatatgcggtcaaatttcgacaaatggggggggggatgaccttacacgtcgatactaaacaagtgtgtttgattctgcc |
6752776 |
T |
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| Q |
155 |
tagacaaatatagaatttgaatgaattgattctggttaaaagtaagtcgaatgtatagtaatttatgttcacacgttcatataaagg |
241 |
Q |
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| T |
6752777 |
tagacaaatatagattttgaatgaattgattctggttaaaagtaagtcgaatgtatagtaatttatgttcacacgttcatataaagg |
6752863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 6762112 - 6762345
Alignment:
| Q |
19 |
gtataaaacaattagcagaaacttccttcttatgagataattcaggaaatacaaatgaatatgcggtcaaatttcgacaaatg--------------ggg |
104 |
Q |
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| T |
6762112 |
gtataaaataattagcagaaacttccttcttatga--tgattcaggaaatacaaatgaagatgcagtcaaatttcgacaaatgaactatttttaaggggg |
6762209 |
T |
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| Q |
105 |
ggcggaatgaccttacatgtcgatactaaacaagtgtgtttgattctgcctagacaaatata--gaatttgaatgaattgattctggttaaaagtaagtc |
202 |
Q |
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| T |
6762210 |
gaagaaaagaccttacatgtcgatactaaaaaagcctgtttgattctgcgatgacaaatatatagattttgaatgaattgattctggttaaat-taagtt |
6762308 |
T |
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| Q |
203 |
gaatgtatagtaatttatgttcacacgttcatataaa |
239 |
Q |
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| T |
6762309 |
gaatgtatagtaatttatgtttacacgttcatataaa |
6762345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 27045609 - 27045556
Alignment:
| Q |
170 |
tttgaatgaattgattctggttaaaagtaagtcgaatgtatagtaatttatgtt |
223 |
Q |
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| T |
27045609 |
tttgaatgaattgattttagttaaaagtaagttgaatgtagagttatttatgtt |
27045556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 22699815 - 22699769
Alignment:
| Q |
177 |
gaattgattctggttaaaagtaagtcgaatgtatagtaatttatgtt |
223 |
Q |
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| T |
22699815 |
gaattgattttggttaaaagtaagttgaatgtaaagtgatttatgtt |
22699769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 22980715 - 22980761
Alignment:
| Q |
177 |
gaattgattctggttaaaagtaagtcgaatgtatagtaatttatgtt |
223 |
Q |
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| T |
22980715 |
gaattgattttggttaaaagtaagttgaatgtaaagtgatttatgtt |
22980761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 22994302 - 22994348
Alignment:
| Q |
177 |
gaattgattctggttaaaagtaagtcgaatgtatagtaatttatgtt |
223 |
Q |
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| T |
22994302 |
gaattgattttggttaaaagtaagttgaatgtaaagtgatttatgtt |
22994348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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