View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12071_low_35 (Length: 204)
Name: NF12071_low_35
Description: NF12071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12071_low_35 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 135; Significance: 1e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 14735983 - 14736174
Alignment:
| Q |
1 |
accgtactaccttgcgttctgtgtgctcattagatggtgtactaaaactcgaaaggaaacgatgcttaatatatttgtcaggtaatgtatttgtatacaa |
100 |
Q |
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| T |
14735983 |
accgtactaccttgcattctgtgtgctcattagttggtgtactaaaactcgaacggaaacgatgcttaatatatttgtcaggtaatgtatctgtatacaa |
14736082 |
T |
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| Q |
101 |
atatgatgtgtaccgcatagagtttttcgatgagagatcagagtaatgatagaagtaatgtcgcatatattgtgatgagtagagagaagtatagttaacg |
200 |
Q |
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| T |
14736083 |
atatgatgtgtaccgcatagagtttttccatgagagatcag------------agtactgtcgcatatattgggatgagtagagagaagtatagttaacg |
14736170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 15597220 - 15597305
Alignment:
| Q |
26 |
ctcattagatggtgtactaaaactcgaaaggaaacgatgcttaatatatttgtcaggtaatgtatttgtatacaaatatgatgtgt |
111 |
Q |
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| T |
15597220 |
ctcattaggtggtgtactaacactcggagagaaaccatgctttatgtatttgtcaagtaatatatttgtattcagatatgatgtgt |
15597305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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