View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12071_low_4 (Length: 773)
Name: NF12071_low_4
Description: NF12071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12071_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 750; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 750; E-Value: 0
Query Start/End: Original strand, 17 - 766
Target Start/End: Complemental strand, 56175075 - 56174326
Alignment:
| Q |
17 |
catccatctccctgtgctttaattccatgatcactacctaacataagaagaaaaaattattttcattttccttgatatttttcctataatgagagtttaa |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56175075 |
catccatctccctgtgctttaattccatgatcactacctaacataagaagaaaaaattattttcattttccttgatatttttcctataatgagagtttaa |
56174976 |
T |
|
| Q |
117 |
attcatgtgaattcgtaaattaaaatatcattaaagcattaccttttcgtcttctagctcgtatgaaacgcgatatcaaacccaacatgcgttgaccttg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56174975 |
attcatgtgaattcgtaaattaaaatatcattaaagcattaccttttcgtcttctagctcgtatgaaacgcgatatcaaacccaacatgcgttgaccttg |
56174876 |
T |
|
| Q |
217 |
aagaaccaaaacagcacagacaacaaattcacaaattgagtctggcaagtcaagtccaaaaaactcaagcccttgaatcatgatgggagcagctagccac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56174875 |
aagaaccaaaacagcacagacaacaaattcacaaattgagtctggcaagtcaagtccaaaaaactcaagcccttgaatcatgatgggagcagctagccac |
56174776 |
T |
|
| Q |
317 |
atgtggataagaacatacaaccccattaagaaagttgagatgaatgtaaaattagcaaaatactgcattgccagcttccaatctgattggggctctgcct |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56174775 |
atgtggataagaacatacaaccccattaagaaagttgagatgaatgtaaaattagcaaaatactgcattgccagcttccaatctgattggggctctgcct |
56174676 |
T |
|
| Q |
417 |
ttaacgacgccaaaacttgttccttggtggaaccaagatcctttgagtcaacaggcttagcagtctgagataacaaaatggcatactgatcgaaggattc |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56174675 |
ttaacgacgccaaaacttgttccttggtggaaccaagatcctttgagtcaacaggcttagcagtctgagataacaaaatggcatactgatcgaaggattc |
56174576 |
T |
|
| Q |
517 |
cttcataccttgccgagctccattttctatcattcctttcatcatggtgctttgtaagaaattcattctccatgatatcaccagacgtgaacattgttct |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56174575 |
cttcataccttgccgagctccattttctatcattcctttcatcatggtgctttgtaagaaattcattctccatgatatcaccagacgtgaacattgttct |
56174476 |
T |
|
| Q |
617 |
tctgatgacaactccggtccaggtgtgatcagataaagtaattccaccttgaatgtgcttccatacataacatctggggtgctaacactagccagaacag |
716 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56174475 |
tctgatgacaactccggtccaggtgtgatcagataaagtaattccaccttgaatgtgcttccatacataacatctggggtgctaacactagccagaacag |
56174376 |
T |
|
| Q |
717 |
caaagttcttcccatcagcttttaaatatgtttgttcctcatagcctttg |
766 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
56174375 |
caaagttcttcccatcagcttttaaatatgtttgttcctcatagcctttg |
56174326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 161; Significance: 2e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 194 - 766
Target Start/End: Complemental strand, 9996401 - 9995829
Alignment:
| Q |
194 |
aaacccaacatgcgttgaccttgaagaaccaaaacagcacagacaacaaattcacaaattgagtctggcaagtcaagtccaaaaaactcaagcccttgaa |
293 |
Q |
| |
|
||||||| |||||||| |||||||||||||| |||||||| ||||||||||||| ||||| |||||||| ||||||||| |||||| |||||||||| |
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| T |
9996401 |
aaacccagcatgcgttcaccttgaagaaccaggacagcacaaacaacaaattcacctattgaatctggcaaatcaagtccagcaaactcgagcccttgaa |
9996302 |
T |
|
| Q |
294 |
tcatgatgggagcagctagccacatgtggataagaacatacaaccccattaagaaagttgagatgaatgtaaaattagcaaaatactgcattgccagctt |
393 |
Q |
| |
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| | | |||||||| ||||| ||||||| ||| ||||||| || || || | ||||||| | || || |||||||||||||||| ||||||||| |
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| T |
9996301 |
ttgtactcggagcagcaagccatatgtggacaagcacatacaggcctatgaaaactgttgagactacggtgaagttagcaaaatactgcactgccagctt |
9996202 |
T |
|
| Q |
394 |
ccaatctgattggggctctgcctttaacgacgccaaaacttgttccttggtggaaccaagatcctttgagtcaacaggcttagcagtctgagataacaaa |
493 |
Q |
| |
|
||||||||| || ||||| || | ||| || |||| | |||||||||| |||||| ||| || ||| || ||||| ||| || ||||| ||| ||| |
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| T |
9996201 |
ccaatctgactgcggctcagcttgtaatgatgccagagcttgttccttattggaactaagttctgttggatcgacaggtttaacatcctgagctaataaa |
9996102 |
T |
|
| Q |
494 |
atggcatactgatcgaaggattccttcataccttgccgagctccattttctatcattcctttcatcatggtgctttgtaagaaattcattctccatgata |
593 |
Q |
| |
|
||||||| || || || ||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| ||| |||| |
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| T |
9996101 |
ttggcatattgttcaaaactatccttcacaccttgccgagccccattttctatcattcctttcatcatggtgctctgtaaaaaattcattcgccaggata |
9996002 |
T |
|
| Q |
594 |
tcaccagacgtgaacattgttcttctgatgacaactccggtccaggtgtgatcagataaagtaattccaccttgaatgtgcttccatacataacatctgg |
693 |
Q |
| |
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| |||||| | ||||| |||||| |||| | ||||||||||||||||||||| |||||||| ||| ||| || ||||| || |||| |||||| || |
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| T |
9996001 |
taaccagatgcgaacactgttctcctgagggcaactccggtccaggtgtgattgtataaagtatttctacccgaaaagtgctcccgtacacaacatcagg |
9995902 |
T |
|
| Q |
694 |
ggtgctaacactagccagaacagcaaagttcttcccatcagcttttaaatatgtttgttcctcatagcctttg |
766 |
Q |
| |
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||||| ||||| | ||||| |||||||||||||||||||||||||||||||| ||||| ||| || ||||| |
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| T |
9995901 |
tgtgctgacactgactagaacggcaaagttcttcccatcagcttttaaatatgtctgttcttcaaaggctttg |
9995829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 9997051 - 9997011
Alignment:
| Q |
17 |
catccatctccctgtgctttaattccatgatcactacctaa |
57 |
Q |
| |
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||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
9997051 |
catccatctccttgtgctttaattccatggtcactacctaa |
9997011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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