View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12071_low_5 (Length: 671)
Name: NF12071_low_5
Description: NF12071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12071_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 646; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 1 - 658
Target Start/End: Complemental strand, 38927612 - 38926955
Alignment:
| Q |
1 |
gtaggttgtcaacaatttgaacgtgcaaacatgttactttcacattttcatctcatgaatgaaagtggaaatattggaagcacagttcagagacttcttt |
100 |
Q |
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| T |
38927612 |
gtaggttgtcaacaatttgaacgtgcaaacatgttactttcacattttcatctcatgaatgaaagtggaaatattggaagcacagttcagagacttcttt |
38927513 |
T |
|
| Q |
101 |
tccatttctctcaagcacttcaagagagaatcaacagagaaaccggacgaggaaagatgaaactgcatagatcaaatgagagaaacaaggagacggaatt |
200 |
Q |
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| T |
38927512 |
tccatttctctcaagcccttcaagagagaatcaacagagaaaccggacgaggaaagatgaaactgcatagatcaaatgagagaaacaaggagacggaatt |
38927413 |
T |
|
| Q |
201 |
gattgataaaatggaattagatactaacatagtagttaaatgtcatcaaaaaattcctttcaatcaagtaatgcaatttgctggtgtacaagctatagtg |
300 |
Q |
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| T |
38927412 |
gattgataaaatggaattagatactaacatagtagttaaatgtcatcaaaaaattcctttcaatcaagtaatgcaatttgctggtgtacaagctatagtg |
38927313 |
T |
|
| Q |
301 |
gaacatgttgcatcacaaacaaaaatccatttgattcatcttaatattggatgtggagtgatgagtacatgtttcatgcaagcattagtggaccgcaagg |
400 |
Q |
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| T |
38927312 |
gaacatgttgcatcacaaacaaaaatccatttgattcatcttaatattggatgtggagtgatgagtacatgtttcatgcaagcattagtagaccgcaagg |
38927213 |
T |
|
| Q |
401 |
aaaagccggttgaaattctgaagatcacagctattggattttctaacaaggctaagttagaagaaattggcaaaagtttaatgagttttgctgaatcctt |
500 |
Q |
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| T |
38927212 |
aaaagccggttgaaattctgaagatcacagctattggattttctaacaaggctaagttagaagaaattggcaaaagtttaatgagttttgctgaatcctt |
38927113 |
T |
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| Q |
501 |
gaacataccctttttatataacatagtttttgttgaggatgctatggagattaagttagatcaatttgacattgaatatgatgaagctgttgctatttac |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38927112 |
gaacataccctttttatataacatagtttttgttgaggatgctatggagattaagttagatcaatttgacattgaatatgatgaagctgttgctatttac |
38927013 |
T |
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| Q |
601 |
tctccatgttcacttaggactatggtatcaaattctgatgggttggagaatttgatga |
658 |
Q |
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| T |
38927012 |
tctccatgttcacttaggactatggtatcaaattctgatggcttggagaatttgatga |
38926955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 241 - 309
Target Start/End: Complemental strand, 44837896 - 44837828
Alignment:
| Q |
241 |
tgtcatcaaaaaattcctttcaatcaagtaatgcaatttgctggtgtacaagctatagtggaacatgtt |
309 |
Q |
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| T |
44837896 |
tgtcatcaaaaacttccttttaatcaagttatgcaatttactggaatacaagctatagttgaacatgtt |
44837828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 521
Target Start/End: Complemental strand, 44837674 - 44837613
Alignment:
| Q |
460 |
gaagaaattggcaaaagtttaatgagttttgctgaatccttgaacataccctttttatataa |
521 |
Q |
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||||||| |||||||| |||| |||||||||||||| |||||| | |||||||||||||| |
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| T |
44837674 |
gaagaaactggcaaaaatttagctagttttgctgaatcattgaacttgccctttttatataa |
44837613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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