View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12071_low_7 (Length: 601)
Name: NF12071_low_7
Description: NF12071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12071_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 30094319 - 30093940
Alignment:
| Q |
1 |
taagaaatatgttgaattaacatattaaaataatgtcgtccttatgcacagaaaatattagttctttgtagtttaaatctctttgggctacacaaagaat |
100 |
Q |
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| T |
30094319 |
taagaaatatgttgaattaacatattaaaataatgtcatccttaggcacagaaaatattagttctttgtagtttaaatctctttgggctacacaaagaat |
30094220 |
T |
|
| Q |
101 |
gttaaaatatcgccatccttaggtacagaaaaataataacatccttattatggctattctatcaaccaaaaactcactattatgtggtgccaattgactc |
200 |
Q |
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| T |
30094219 |
gttaaaatatcgccatccttaggtacagaaaaataataacatccttattatggctattctatcaaccaaaaactcattattatgtgatgccaattgactc |
30094120 |
T |
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| Q |
201 |
ctcaagagtccagagattagtccatctctaacataagttacataattaattatttgatgttccggtgggttcgacaccttttgacttgtacaagcaattc |
300 |
Q |
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| T |
30094119 |
ctcaagagtccagagatttgtccatctctaacataagttacataattaattatttgatgttccggtgggttcgacaccttttgacttgtacaagcaattc |
30094020 |
T |
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| Q |
301 |
aacnnnnnnncaataaggtgagatacagttttcnnnnnnnattatttggttgtcgattgatgcacaccaaaattaacttt |
380 |
Q |
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| T |
30094019 |
aacaaaaaaacaataaggtgagatacagttttctttttttattatttggttgtcgattgatgcacaccaaaattaacttt |
30093940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 390 - 586
Target Start/End: Complemental strand, 30093904 - 30093700
Alignment:
| Q |
390 |
tatggagtcaaatacattaatgtaatgtagtttatcccttaactttatttgatatgatcaactagatatctctttacac------------taatcccct |
477 |
Q |
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| T |
30093904 |
tatggagtcaaatacattaatgtaatgtagtttatcccttaactttatttgatatgatcaactagatatctctttgcacaattgtagatgttaatcccct |
30093805 |
T |
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| Q |
478 |
gagcttcataggattgtcatttttgatatagttttccttcaactaacttcataaatagagactcatttcttttacttatttatttattttgtagttattt |
577 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
30093804 |
cagcttcgtaggactgtcatttttgatatagttttccttcaactaacttcataaatagagactccattcttttacttattt----attttgtagttattt |
30093709 |
T |
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| Q |
578 |
aagatgata |
586 |
Q |
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| T |
30093708 |
aagatgata |
30093700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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