View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12071_low_9 (Length: 534)
Name: NF12071_low_9
Description: NF12071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12071_low_9 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 25 - 534
Target Start/End: Original strand, 33890802 - 33891311
Alignment:
| Q |
25 |
tatttgtgacggagacatgaaaaataagcttagattctgaagctgaggcagagaagccaagagagcaaaggcacgtggaatttctaactcttcaaattcc |
124 |
Q |
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| T |
33890802 |
tatttgtgacggagacacgaaaaataagcttagattctgaagctgaggcagagaagccaagagagcaaaggcacgtggaatttctaactcttcaaactcc |
33890901 |
T |
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| Q |
125 |
atggagttaagcaaaactttgataacttgggcaaatcgatagagaaaatagaaagaatgttttcacagtagacgaaggacggaaggtctgaggccgcggt |
224 |
Q |
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| T |
33890902 |
atggagttaagcaaaactttgataacttgggcgaatcgatagatgaaatagaaagaatgttttcacagtagacgaaggacggaaggtctgaggccgtgat |
33891001 |
T |
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| Q |
225 |
accaatcttcgttggaaggcgagaagtagttagcttgagactacgcaatgtggaactaaccatatgaatcatgtggtggaatatacaatctatgaagata |
324 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33891002 |
accaatcttcgttggaaggcgagaagtaattagcttgagactacgcaatgtggaactaaccatatgaatcatgtggtggaatatacaatctatgaagata |
33891101 |
T |
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| Q |
325 |
aggtttccaagattgaagcatttataaaacagatataacaagacatccttctctactttgaattcctctatcacaagtgtcttaagatgcttaaatccag |
424 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33891102 |
aggtttccaagattgaagcatttataaaacagacataacaagacatccttctctactttgaattcctctatcacaagcgtcttaagatgcttaaatccag |
33891201 |
T |
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| Q |
425 |
aaaagttcgcatgtggcaatctaaaacagtttatgtaaggaaatgtgtaagtttcaaggttaggcattccattccataaggtacatttgagaagaagagg |
524 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33891202 |
aaaagttggcatgtggcaatcgaaaacagtttatgtaaggaaatgtgtaagtttcaaggttaggcattccattccataaggtacatttgagaagaagagg |
33891301 |
T |
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| Q |
525 |
tgaatgtgtt |
534 |
Q |
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| T |
33891302 |
tgaatgtgtt |
33891311 |
T |
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