View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12072_low_1 (Length: 732)
Name: NF12072_low_1
Description: NF12072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12072_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 642; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 7 - 716
Target Start/End: Original strand, 40675769 - 40676469
Alignment:
| Q |
7 |
caaaggaaaattgacatgtaaatgtaattaaccaccactcacaatcatccatgtatacaaatagtaatatgaattgcagagcaaataaagaatggctaca |
106 |
Q |
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| T |
40675769 |
caaaggaaaattgacatgtaaatgtaattaaccaccactcacaatcatccatgtatacaaatagtaatatgaattgcagagcagataaagaatggctgca |
40675868 |
T |
|
| Q |
107 |
atgtgcaagtgcaatcttcttaatcaaccagagaaactttgaaacaaaggagagaagtggtttttcccattatattcaaagtagaatctctgatttgcag |
206 |
Q |
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| T |
40675869 |
atgtgcaagtgcaatcttcttaatcaaccagagaaactttgaaacaaaggagagaagtggtttttcccattatattcaaagtagaatctctgatttgcag |
40675968 |
T |
|
| Q |
207 |
gatgatcgacaattcacaaaacttgttttcttaatttgagagtgtttttgtggagacatacaaaagggactgtgaaccataaatcaggattctttcacta |
306 |
Q |
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| T |
40675969 |
gatgatcgacaattcacaaaacttgttttcttaatttgagagtgtttttgtggagacatacaaaagggactgtgaaccataaatcaggattctttcacta |
40676068 |
T |
|
| Q |
307 |
tttactttctagagcatcttctgtgtattcatatctttgatccttaacacgtgtacaatacaatcttgtgtacaatcttccaacacatacttatttgaga |
406 |
Q |
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| T |
40676069 |
tttactttctagagcatcttctgtgtattcatatctttgatccttaacacgtgtacaatacaatcttgtgtacaatcttccaacacagacttatttgaga |
40676168 |
T |
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| Q |
407 |
ataacaataagggttacaaataacatcaatatggaaaatgcattttgatgataaaacctggaaaaccttgatggcattggtaaacttagctcaaaaatga |
506 |
Q |
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| T |
40676169 |
ataacaataagggttacaaataacatcaatatggaaaatgcattttgatgat---------aaaaccttgatggcatcggtaaacttagctcaaaaatga |
40676259 |
T |
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| Q |
507 |
attttatgaatcaaaaaatacaaactttcagtattaatattccattctgcagtatcaccatcatcatcatcatctaaaatctaaatcatagattagatca |
606 |
Q |
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| T |
40676260 |
attttatgaataaaaaaatacaaactttcagtattaatattccattctgtagtatcaccattatcatcatgatctaaaatctaaatcatagattagatca |
40676359 |
T |
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| Q |
607 |
acattaaacagcaatgcattaaataaaagttatatttttacagaaacagcaatgtaacaaaaaccttaaaagtgtctaataaatcaaaacaagcagataa |
706 |
Q |
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| T |
40676360 |
acattaaacagcaatgcattaaataaaagttatatttttacagagacagcaatgtaacaaaaaccttaaaagtgtctaataaatcaaaacaagcagataa |
40676459 |
T |
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| Q |
707 |
atgtgaaatt |
716 |
Q |
| |
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| T |
40676460 |
atgtgaaatt |
40676469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 7 - 234
Target Start/End: Original strand, 40662227 - 40662455
Alignment:
| Q |
7 |
caaaggaaaattgacatgtaaatgtaattaaccaccactcacaatcatccatgtatacaaatagtaatatgaattgcagagcaaataaagaatggctaca |
106 |
Q |
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| T |
40662227 |
caaaggaaaattgacatgtaaatgtaattaaccaccactcacaatcatccatgtatacaaatagtaatatgaattgcagagcaaataaagaatggctaca |
40662326 |
T |
|
| Q |
107 |
atgtgcaagtgcaatcttcttaatcaaccagagaaactttgaaacaaaggagagaagtggtttttcccattatattcaaagtagaat-ctctgatttgca |
205 |
Q |
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| T |
40662327 |
atgtgcaagagcaatcttcttaatcaatcagagattctttgaaacaaaggagagaaacggttattcccattatattcaaagtagaatacttggatttgca |
40662426 |
T |
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| Q |
206 |
ggatgatcgacaattcacaaaacttgttt |
234 |
Q |
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| T |
40662427 |
ggacgacccacaattcacaagacttgttt |
40662455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 267 - 352
Target Start/End: Original strand, 40662466 - 40662549
Alignment:
| Q |
267 |
caaaagggactgtgaaccataaatcaggattctttcactatttactttctagagcatcttctgtgtattcatatctttgatcctta |
352 |
Q |
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| T |
40662466 |
caaaagggactg--aaccacaaatcatgattctttcactatttactttctagagcatcttctgtgtattcctatctttgatcctta |
40662549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 643 - 703
Target Start/End: Original strand, 40662613 - 40662672
Alignment:
| Q |
643 |
tttacagaaacagcaatgtaacaaaaaccttaaaagtgtctaataaatcaaaacaagcaga |
703 |
Q |
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| T |
40662613 |
tttaccgagacagcaatgtaacaaaaaccttaaa-gtgtctaataaatcaaaacaagcaga |
40662672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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