View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12072_low_11 (Length: 255)
Name: NF12072_low_11
Description: NF12072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12072_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 5570250 - 5570022
Alignment:
| Q |
1 |
aaaaatagtgatgagaatttgttgcatagggaggactgagtttcatttcatgtgtgttgcaattgttttccaaatgccaagtgaggtgtgaaagaagaga |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5570250 |
aaaaatagtgatgagaatttgttgcataggcaggactgagtttcatttcatgtgtgttgcaattgttttccaaatgccaagtgaggtgtgaaagaagaga |
5570151 |
T |
|
| Q |
101 |
gtaaaaattaaacatggacnnnnnnnnagtcccacattgccagcaaagaaacataacatacgggaagttgttctatataataacatagcaagttcaattt |
200 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5570150 |
gtaaaaattaaacatgaacttttttttagtcccacattgccagcaaagaaacataacatacgggaagttgttctatataataacatagcaagttcaattt |
5570051 |
T |
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| Q |
201 |
tataaaggtgtcaattggctacttctgtt |
229 |
Q |
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||||||||||| |||||||||||||||| |
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| T |
5570050 |
aataaaggtgtctattggctacttctgtt |
5570022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 5578684 - 5578626
Alignment:
| Q |
128 |
agtcccacattgccagcaaagaaacataacatacgggaagttgttctatataataacat |
186 |
Q |
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||||||||||||| |||||||||||||||||||| |||||| |||||||||||||| |
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| T |
5578684 |
agtcccacattgcttgcaaagaaacataacatacgtagagttgtcctatataataacat |
5578626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 12066711 - 12066763
Alignment:
| Q |
128 |
agtcccacattgccagcaaagaaacataacatacgggaagttgttctatataa |
180 |
Q |
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| T |
12066711 |
agtcccacattgctaccaaagaaacataacacatgtgaagttgttctatataa |
12066763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 12075678 - 12075728
Alignment:
| Q |
128 |
agtcccacattgccagcaaagaaacataacatacgggaagttgttctatataa |
180 |
Q |
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||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| |
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| T |
12075678 |
agtcccatattgctagcaaagaaacata--atacgtgaagttgttctatataa |
12075728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 12046993 - 12047045
Alignment:
| Q |
128 |
agtcccacattgccagcaaagaaacataacatacgggaagttgttctatataa |
180 |
Q |
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||||||||||||| |||||||||| |||||| | | ||||||||| ||||||| |
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| T |
12046993 |
agtcccacattgctagcaaagaaaaataacacatgtgaagttgttatatataa |
12047045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 12058623 - 12058675
Alignment:
| Q |
128 |
agtcccacattgccagcaaagaaacataacatacgggaagttgttctatataa |
180 |
Q |
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||||||| ||||| ||||||||||||||||| | | ||||||||| ||||||| |
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| T |
12058623 |
agtcccatattgctagcaaagaaacataacacatgtgaagttgttatatataa |
12058675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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