View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12072_low_2 (Length: 606)
Name: NF12072_low_2
Description: NF12072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12072_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 5 - 590
Target Start/End: Original strand, 36675922 - 36676528
Alignment:
| Q |
5 |
ctatctttagcttcatttggcaatggtgtttcttggaccatttatgctctcattccttttgacccattcattgcggtaagaaaacaaattataataatac |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36675922 |
ctatctttagcttcatttggcaatggtgtttcttggaccatttatgctctcattccttttgacccattcattgcggtaagaaaataaattataataatac |
36676021 |
T |
|
| Q |
105 |
catgcttaattaaggttctactagggttgttaaactaatatt----gtatatctcaatcagataccaaatgggattgggacaatgtttgcggtagtacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36676022 |
catgcttaattaaggttctactagggttgttaaactaatattcattgtatatctcaatcagataccaaatgggattgggacaatgtttgcggtggtacaa |
36676121 |
T |
|
| Q |
201 |
ttgattctatatgcatcatattacaagtcaacccaagaacagatagcagcaaggaagaataatggaaaaggagagatgaatctgtcagaagtggtagttg |
300 |
Q |
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| T |
36676122 |
ttgattctatatgcatcatattacaagtcaacccaagaacagatagcagcaaggaagaataatggaaaaggagagatgaatctgtcagaagtggtagttg |
36676221 |
T |
|
| Q |
301 |
gcatgagtaatgctactgtacaagacaacaagaagataactgctattcatcattcttctccaagtgccaaatgactattaatggcactcatgcatcctct |
400 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676222 |
gcatgagtaatgctactgtccaagacaacaagaagataactgctattgatcattcttctccaagtgccaaatgactattaatggcactcatgcatcctct |
36676321 |
T |
|
| Q |
401 |
tcctttgcccaacccattgagtc------------attaattaattatgatcttatagtttttggattgattcttgtaatcttatttctatttccagctt |
488 |
Q |
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| T |
36676322 |
tcctttgcccaacccattgagtcattaattaattaattaattaattatgatcttatagtttttggattgattcttgtaatcttatttctatttccagctt |
36676421 |
T |
|
| Q |
489 |
aattttcatttgttagttaccatatcttcaac-----cttgttagagaccaacacatgaatatatgtgttgttttgttactctttgcctttttatttcta |
583 |
Q |
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| T |
36676422 |
aattttcatttgttagttaccatatcttcaaccttagcttgttacagaccaacacatgaatatatgtgttgttttgttactctttgcctttttatttcta |
36676521 |
T |
|
| Q |
584 |
gtctatg |
590 |
Q |
| |
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||||||| |
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| T |
36676522 |
gtctatg |
36676528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 5 - 590
Target Start/End: Original strand, 36686004 - 36686610
Alignment:
| Q |
5 |
ctatctttagcttcatttggcaatggtgtttcttggaccatttatgctctcattccttttgacccattcattgcggtaagaaaacaaattataataatac |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36686004 |
ctatctttagcttcatttggcaatggtgtttcttggaccatttatgctctcattccttttgacccattcattgcggtaagaaaataaattataataatac |
36686103 |
T |
|
| Q |
105 |
catgcttaattaaggttctactagggttgttaaactaatatt----gtatatctcaatcagataccaaatgggattgggacaatgtttgcggtagtacaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36686104 |
catgcttaattaaggttctactagggttgttaaactaatattcattgtatatctcaatcagataccaaatgggattgggacaatgtttgcggtggtacaa |
36686203 |
T |
|
| Q |
201 |
ttgattctatatgcatcatattacaagtcaacccaagaacagatagcagcaaggaagaataatggaaaaggagagatgaatctgtcagaagtggtagttg |
300 |
Q |
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| T |
36686204 |
ttgattctatatgcatcatattacaagtcaacccaagaacagatagcagcaaggaagaataatggaaaaggagagatgaatctgtcagaagtggtagttg |
36686303 |
T |
|
| Q |
301 |
gcatgagtaatgctactgtacaagacaacaagaagataactgctattcatcattcttctccaagtgccaaatgactattaatggcactcatgcatcctct |
400 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36686304 |
gcatgagtaatgctactgtccaagacaacaagaagataactgctattgatcattcttctccaagtgccaaatgactattaatggcactcatgcatcctct |
36686403 |
T |
|
| Q |
401 |
tcctttgcccaacccattgagtc------------attaattaattatgatcttatagtttttggattgattcttgtaatcttatttctatttccagctt |
488 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36686404 |
tcctttgcccaacccattgagtcattaattaattaattaattaattatgatcttatagtttttggattgattcttgtaatcttatttctatttccagctt |
36686503 |
T |
|
| Q |
489 |
aattttcatttgttagttaccatatcttcaac-----cttgttagagaccaacacatgaatatatgtgttgttttgttactctttgcctttttatttcta |
583 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36686504 |
aattttcatttgttagttaccatatcttcaaccttagcttgttacagaccaacacatgaatatatgtgttgttttgttactctttgcctttttatttcta |
36686603 |
T |
|
| Q |
584 |
gtctatg |
590 |
Q |
| |
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||||||| |
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| T |
36686604 |
gtctatg |
36686610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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