View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12072_low_3 (Length: 584)
Name: NF12072_low_3
Description: NF12072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12072_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 13 - 570
Target Start/End: Complemental strand, 336099 - 335551
Alignment:
| Q |
13 |
aaggggaatcgaactcaaatcctagaatagttttgtcttcattggtctttttatgtgaaaataaaaaatgcaagttggaattggaaataaatggttatag |
112 |
Q |
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| T |
336099 |
aaggggaatcgaactcaaatcctagaatagttttgtcttcattggtctttttatgtgaaaatcaaaattgcaagttggaattggaaataaatggttatag |
336000 |
T |
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| Q |
113 |
gcatagaaggtaaagagagagaaatccacaaaacaaaacacaagaaggcattgacatcacatgctataatatatagacagcgatgcactgtgtaaacctg |
212 |
Q |
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| T |
335999 |
gcatagaaggtaaagagagagaaatccacaaaacaacacacaagaaggcattgacatcacatgctata-----tagacagcgatgcactgtgtaaacctg |
335905 |
T |
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| Q |
213 |
gtaaacgtccacttcccattccattacactgtatggacaccacacccctatcccttctactttctatttgagatcaagatatgattctttcttgtatagt |
312 |
Q |
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| T |
335904 |
gtaaacgtccacttcccattccattacactgtatggacaccacacccctatctcctct---ttctatttgagatcaagatatgattctttcttgtatagt |
335808 |
T |
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| Q |
313 |
ttagagcaattcatattagttggatggatcaaaaagtggtcctttaaaattaaaacttaagtttttatttggtacaccatacataaataaatctgacttg |
412 |
Q |
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| T |
335807 |
ttagagcaattcatattagttggatggatcaaaaagtggtcctttaaaattaaaact-aagtttt-atttggtacaccatacataaataaatctgacttg |
335710 |
T |
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| Q |
413 |
ggcacaaatgtggtaagaaaaatggacataaatatgcatattagttggaccaaaagtgacccccttttccttttctgtgcccatcatgtgtgacaattaa |
512 |
Q |
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| T |
335709 |
ggcacaaatgtggtaagaaaaatggacataaatatgcatattagttggaccaaaagtgacccccttttccttttctgtgcccatcatgtgtgacaattaa |
335610 |
T |
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| Q |
513 |
agaatcactcaactagtttgtacactaacatttatttagattgc-agaggcaaaatgtg |
570 |
Q |
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| T |
335609 |
agaatcactcaactagtttgtacactaacatttatttagattgcaagaggcaaaatgtg |
335551 |
T |
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