View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12072_low_4 (Length: 542)
Name: NF12072_low_4
Description: NF12072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12072_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 8e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 34788736 - 34788905
Alignment:
| Q |
19 |
agagatgtgtacaagtaagcagccttttgtgaacttctaagtatttttgttttaagtctctgttttgttggatttgtagtactttctgtccatgcttttc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788736 |
agagatgtgtacaagtaagcagccttttgtgaacttctaagtattttg--tttaagtctctgttttgttggatttgtagtactttctgtccatgcttttc |
34788833 |
T |
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| Q |
119 |
ctgaattttatgcatattttttacgggatatctgctagtctaatagtatatccttcactgaaaatcactgca |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34788834 |
ctgaattttatgcatattttttacgggatatctgctagtctaatagtatatcgttcactgaaaatcactgca |
34788905 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 1e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 194 - 442
Target Start/End: Complemental strand, 2291577 - 2291336
Alignment:
| Q |
194 |
tttttataccaatgcagtttgtgggttttgattcattcacggttcttatgctgggatactgtttttagagcagtggttttgtttttgcctcttctttgtt |
293 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
2291577 |
tttttataccaatg-aggttgtgggttttgattcattcacggttcttaggctgggatactgtttttagagcagtggttttgtttttgcctcctctttatt |
2291479 |
T |
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| Q |
294 |
tgatgcaagggctttatga---tcttttttgggcaaaatgattttgcaattgcatacattaaaatagcctcttttaggatggtttagttatgcctacttt |
390 |
Q |
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||||||||| ||||||||| |||||| ||||| |||||||| ||||||| ||||||||||||| |||||| |||||||| ||| || ||||| |
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| T |
2291478 |
tgatgcaagagctttatgatcttcttttctgggctaaatgatt------ttgcatatattaaaatagcctattttagaatggtttaattacgctcacttt |
2291385 |
T |
|
| Q |
391 |
taatttttgttacattagattaatagttactataagtacctggttgatgtta |
442 |
Q |
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|||||||| |||||| ||||||| | |||||| ||||||||||||||||| |
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| T |
2291384 |
taatttttattacat---attaataatgactataggtacctggttgatgtta |
2291336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 2292457 - 2292333
Alignment:
| Q |
19 |
agagatgtgtacaagtaagcagccttttgtgaacttctaagtatttttgttttaagtctctgttttgttggatttgtagtactttctgtccatgcttttc |
118 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||| ||| | ||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2292457 |
agagacgtgtacaagtaagcagccttttgtgaacttccaagcattgtg--tttaaatctctgttttgttggatttgtagtactttctatccatgcttttc |
2292360 |
T |
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| Q |
119 |
ctgaattttatgcatattttttacggg |
145 |
Q |
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||| ||| | |||||||||||||||| |
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| T |
2292359 |
ctgtattgcaagcatattttttacggg |
2292333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 346 - 443
Target Start/End: Complemental strand, 2597280 - 2597185
Alignment:
| Q |
346 |
acattaaaatagcctcttttaggatggtttagttatgcctacttttaatttttgttacattagattaatagttactataagtacctggttgatgttat |
443 |
Q |
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||||||||||||||| ||||||||||||||| |||||| || ||||||||||| || |||||||||||||||||||||||||||| ||||||||||| |
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| T |
2597280 |
acattaaaatagccttttttaggatggtttaattatgcttatttttaatttttatt--attagattaatagttactataagtacctagttgatgttat |
2597185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 88 - 298
Target Start/End: Complemental strand, 2597520 - 2597295
Alignment:
| Q |
88 |
ggatttgtagtactttctgtccatgcttttcctgaattttatgcatattttttacgggatatctgc--------------tagtctaatagt-atatcct |
172 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||| |||||||||| |||| ||| ||||| |||||||||| | || || | |
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| T |
2597520 |
ggatttgtagtactttctgtccatggttttcctgaattgtatgcatattctttatggggtatctttgttgggaatcttattagtctaataatcatgtcgt |
2597421 |
T |
|
| Q |
173 |
tcactgaaaatcactgcaagctttttataccaatgcagtttgtgggttttgattcattcacggttcttatgctgggatactgtttttaga-gcagtggtt |
271 |
Q |
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||||||||| ||| ||||||||||||| | ||||| || ||||||| |||||||| ||| ||||||||| ||| ||||||||||| | ||||||||| |
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| T |
2597420 |
tcactgaaagtcagtgcaagctttttacatcaatg-agattgtggggtttgattctttcctggttcttatataggggtactgtttttaaaagcagtggtt |
2597322 |
T |
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| Q |
272 |
ttgtttttgcctcttctttgtttgatg |
298 |
Q |
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||||||||||||| | ||||||||||| |
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| T |
2597321 |
ttgtttttgcctcctttttgtttgatg |
2597295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 442
Target Start/End: Complemental strand, 33635394 - 33635346
Alignment:
| Q |
394 |
tttttgttacattagattaatagttactataagtacctggttgatgtta |
442 |
Q |
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||||||| |||||||||||||| |||||||| |||| |||||||||||| |
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| T |
33635394 |
tttttgtcacattagattaataattactataggtacttggttgatgtta |
33635346 |
T |
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