View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12072_low_5 (Length: 424)
Name: NF12072_low_5
Description: NF12072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12072_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 28 - 410
Target Start/End: Complemental strand, 38367177 - 38366794
Alignment:
| Q |
28 |
atcttggtcacacaacgaacaaattatttccttnnnnnnnnnntagacgaatcttgaacttcataaattgattccgatcggttcttcgtaagtacaagtc |
127 |
Q |
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| T |
38367177 |
atcttcgtcacacaacga-caaattatttccttcataaaaaaatagacgaatcttgaacttcataaattgattccgatcgggtcttcgtaagtacaaatc |
38367079 |
T |
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| Q |
128 |
aaattgatgttttctttcaattttaattatgaaacctccgtgatnnnnnnnnnn-caaatctcgagtacaaattgaaatcagtaaattgaaaatgaacaa |
226 |
Q |
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| T |
38367078 |
aaattgattttttctttcaattttaattatgaaacctccgtgataaaaaaaaaaacaaatttcgagtacaaattgaaatcagtaaattgaaaatgaacaa |
38366979 |
T |
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| Q |
227 |
gggtacacggttgtgaatttctaa-ttaatgatgaatatatgtgatgaaattattggatgaagtaagggacaaccaatggtggcttatgagatagctcag |
325 |
Q |
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| T |
38366978 |
gggtacacggttgtgaatttctaaattaatgatgaatatatgtgatgaaattattggatgaagtaagggacaaccaatggtggcttatgagatagctcag |
38366879 |
T |
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| Q |
326 |
tgcctgatacaaaatttgggttgtagagatcaataggaaggggatgaagaacatcaaaatcaaccatggatatcgaatgtctctg |
410 |
Q |
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| T |
38366878 |
tgcctgatgcaaaatatgggttgtagagatcaataggaaggggatgaagaacatcaaaatcaaccatggatatcgaatgtttctg |
38366794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 29101473 - 29101390
Alignment:
| Q |
86 |
cttcataaattgattccgatcggttcttcgtaagtacaagtcaaattgatgttttctttcaattttaattatgaaacctccgtga |
170 |
Q |
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| T |
29101473 |
cttcacaaattgattcccatcagtttttcgtaa-tacatgtcaaattgattttttatttcaatgttcattgtaaaacctccgtga |
29101390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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