View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12072_low_6 (Length: 392)
Name: NF12072_low_6
Description: NF12072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12072_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 376
Target Start/End: Original strand, 19247716 - 19248088
Alignment:
| Q |
13 |
cagagagaaaagagagtttaaaaggttttgttcgatgttgagaaattgtattgaataatggttatgatacaagatattgatatgtgatatgagttacata |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19247716 |
cagagagaaaagagagtttaaaaggttttgttcgatgttgagaaattgtattgaataatggttatgatacaagatattgatatgtgatatgagttacata |
19247815 |
T |
|
| Q |
113 |
tcaattgaatacaaaaattaagtacttagaggctaggtgaagttacttgatctgcaagtcactaaccaaccaactaactaactaac---------aaaca |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
19247816 |
tcaattgaatacaaaaattaagtacttagaggctaggtgaagttacttgatctgcaagtcactaaccaaccaaccaactaactaacaaacataacaaaca |
19247915 |
T |
|
| Q |
204 |
tagttggatttctccataacatgctccctataatccaactatggaacgacaaacattcaaatcaatccaattgcatgattcctaatttctttccaagaga |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19247916 |
tagttggatttctccataacatgctccctataatccaactatggaacgacaaacattcaaatcaatccaattgcattattcctaatttctttccaagaga |
19248015 |
T |
|
| Q |
304 |
ccagaacctatcaacctcaatctcatagtcagactgtcagcaagttgagaatattcacttgggaagtgcttca |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19248016 |
ccagaacctatcaacctcaatctcatagtcagactgtcagcaagttgagaatattcacttgggaagtgcttca |
19248088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 25627630 - 25627586
Alignment:
| Q |
58 |
ttgtattgaataatggttatgatacaagatattgatatgtgatat |
102 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||| ||||| |
|
|
| T |
25627630 |
ttgtattgaataatagttatgattcaagatattgatatgagatat |
25627586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 53611355 - 53611254
Alignment:
| Q |
118 |
tgaatacaaaaattaagtacttagaggctaggtgaagttacttgatctgcaagtcactaaccaaccaactaactaactaacaaacatagttggatttctc |
217 |
Q |
| |
|
|||| ||||||| |||||||| | |||||| ||| ||||||||| || |||||||||||||||| ||||||||||| ||||||||||||||||||| || |
|
|
| T |
53611355 |
tgaacacaaaaactaagtactcataggctaagtggagttacttgcactacaagtcactaaccaactaactaactaaccaacaaacatagttggatttatc |
53611256 |
T |
|
| Q |
218 |
ca |
219 |
Q |
| |
|
|| |
|
|
| T |
53611255 |
ca |
53611254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 161
Target Start/End: Original strand, 29298500 - 29298603
Alignment:
| Q |
56 |
aattgtattgaataatggttatgatacaagatattgatatgt--gatatgagttacatatcaattgaatacaaaaattaagtacttagaggctaggtgaa |
153 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||| ||||||||| |||||| || | |
|
|
| T |
29298500 |
aattgtattgcataatggttatgatacaatatattgatatgtaatatatgagtt--atatcaattgaatacaaaa--caagtacttataggctaagttga |
29298595 |
T |
|
| Q |
154 |
gttacttg |
161 |
Q |
| |
|
|||||||| |
|
|
| T |
29298596 |
gttacttg |
29298603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 22054843 - 22054773
Alignment:
| Q |
56 |
aattgtattgaataatggttatgatacaagatattgatatgtgatatgagttacatatcaattgaatacaaaa |
128 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||| || |||||||||| || |||||| ||||||||||| |
|
|
| T |
22054843 |
aattgtattgcatagtggttatgatacaagatattaatgtgtgatatgaatt--ctatcaaatgaatacaaaa |
22054773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 231 - 343
Target Start/End: Complemental strand, 10588617 - 10588504
Alignment:
| Q |
231 |
ctataatccaactatggaacgacaaacattcaaatcaatccaattgcatgattcctaatttctttccaagagaccagaacctatcaa-cctcaatctcat |
329 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||| ||||| | | ||| |||||||||||||||||| |||||| |||| | |||||||| | |
|
|
| T |
10588617 |
ctataatccaactatggaacaacaaacatataaatcaatcaaattgaactactcccaatttctttccaagagacaagaacccctcaatcttcaatctctt |
10588518 |
T |
|
| Q |
330 |
agtcagactgtcag |
343 |
Q |
| |
|
||| ||| |||||| |
|
|
| T |
10588517 |
agttagaatgtcag |
10588504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 285
Target Start/End: Complemental strand, 9476458 - 9476368
Alignment:
| Q |
195 |
taacaaacatagttggatttctccataacatgctccctataatccaactatggaacgacaaacattcaaatcaatccaattgcatgattcc |
285 |
Q |
| |
|
|||||||||||| | ||||| || ||| |||||| || |||| |||||||||||| ||||| || |||||||||| | ||| |||||||| |
|
|
| T |
9476458 |
taacaaacataggttgatttatcaatagcatgctgtctgtaattcaactatggaacaacaaatatacaaatcaatcaacttggatgattcc |
9476368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 37749375 - 37749457
Alignment:
| Q |
110 |
atatcaattgaatacaaaaattaagtacttagaggctaggtgaagttacttgatctgcaagtcactaaccaaccaactaacta |
192 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| |||||| || ||| ||||| || |||| ||||||| ||| ||||||||| |
|
|
| T |
37749375 |
atatcaactgaatacaaaagttaagtacttataggctaagttgagtaacttgcactacaagccactaacaaactaactaacta |
37749457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 929883 - 929842
Alignment:
| Q |
185 |
actaactaactaacaaacatagttggatttctccataacatg |
226 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| |||||| |
|
|
| T |
929883 |
actaactaactaacaaacataattggatttatccacaacatg |
929842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 28028084 - 28027979
Alignment:
| Q |
110 |
atatcaattgaatacaaaaattaagtacttagaggctaggtgaagttacttgatctgcaagtcactaaccaaccaactaactaactaacaaacatagttg |
209 |
Q |
| |
|
||||||| ||||||||||| |||||||||| |||||| || ||| ||||| || |||| |||| ||| ||||||||||| ||||| |||||||| |
|
|
| T |
28028084 |
atatcaactgaatacaaaagctaagtacttataggctaagttgagtaacttgcactacaagccact----aacaaactaactaaccaacaagcatagttg |
28027989 |
T |
|
| Q |
210 |
gatttctcca |
219 |
Q |
| |
|
||||| |||| |
|
|
| T |
28027988 |
gatttatcca |
28027979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University