View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12072_low_7 (Length: 350)

Name: NF12072_low_7
Description: NF12072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12072_low_7
NF12072_low_7
[»] chr7 (5 HSPs)
chr7 (22-334)||(37580818-37581134)
chr7 (107-271)||(37480685-37480857)
chr7 (107-271)||(6778583-6778755)
chr7 (107-271)||(6774296-6774468)
chr7 (174-271)||(37476241-37476335)
[»] chr4 (3 HSPs)
chr4 (177-271)||(55118878-55118972)
chr4 (115-152)||(52791814-52791851)
chr4 (113-153)||(11160852-11160892)
[»] chr5 (1 HSPs)
chr5 (105-161)||(8992555-8992611)
[»] chr1 (1 HSPs)
chr1 (105-271)||(45071637-45071811)
[»] chr3 (1 HSPs)
chr3 (105-161)||(50915239-50915295)


Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 22 - 334
Target Start/End: Complemental strand, 37581134 - 37580818
Alignment:
Q  22 taaccacaattattgattcc-atgggttttccccgggacgagctgcctcctcttcattcggctttggactgaagttattctgactgttaaatgtcttgcg 120  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  37581134 taaccacaattattgattcccatgggttttccccgggacgagctgcctcctcttcgttcggctttggactgaagttattctgactgttaaacgtcttgcg 37581035  T
Q  121 aatctcctccggcgtcttccccttgatcatgtccgccacaggtaagc---aacaggctcttgatgttcaagtaatttgcagcttgaatgagttcgaaaag 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37581034 aatctcctccggcgtcttccccttgatcatgtccgccacaggtaagcttcaacaggctcttgatgttcaagtaatttgcagcttgaatgagttcgaaaag 37580935  T
Q  218 catagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatccaaactcaccgcagcgtcccagcctgcttccacattcttctgaacc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37580934 catagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatccaaactcaccgcagcgtcccagcctgcttccacattcttctgaacc 37580835  T
Q  318 tcaagatcattggaact 334  Q
    |||||||||||||||||    
T  37580834 tcaagatcattggaact 37580818  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 107 - 271
Target Start/End: Original strand, 37480685 - 37480857
Alignment:
Q  107 ttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacag--------gtaag---caacaggctcttgatgttcaagtaatttg 195  Q
    ||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||        |||||   ||  || |||||||| |||||||||||||    
T  37480685 ttaaaagtctttcgaatttcctccggcgtcttccctttgatcatgtccgccacagtctggcaggtaagatccagtagactcttgatattcaagtaatttg 37480784  T
Q  196 cagcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatc 271  Q
    ||||  |||||||  |||||||| |||||||||||||   ||| | ||||||||| ||||||  ||||||||||||    
T  37480785 cagcaagaatgagaccgaaaagcttagcctgatcaac---ctttacgaattcagcatcccaattcttaagatcatc 37480857  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 271
Target Start/End: Complemental strand, 6778755 - 6778583
Alignment:
Q  107 ttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacag--------gtaag---caacaggctcttgatgttcaagtaatttg 195  Q
    ||||| ||||| ||||| |||||||| |||||||| |||||||||||||||||||        |||||   ||  || |||||||| |||||||||||||    
T  6778755 ttaaaagtctttcgaatttcctccggtgtcttccctttgatcatgtccgccacagactggcatgtaagatccagtagactcttgatattcaagtaatttg 6778656  T
Q  196 cagcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatc 271  Q
    ||||  ||||||| ||||||||  || ||||||||||   ||||| ||||||||| ||||||  ||||||||||||    
T  6778655 cagcaagaatgagatcgaaaagtgtatcctgatcaac---cttcacgaattcagcatcccaattcttaagatcatc 6778583  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 271
Target Start/End: Complemental strand, 6774468 - 6774296
Alignment:
Q  107 ttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgcca--------caggtaag---caacaggctcttgatgttcaagtaatttg 195  Q
    ||||| ||||| ||||| |||||||| |||||||| ||||||||||||||||        ||||||||   ||| || |||||||| ||||||| |||||    
T  6774468 ttaaaagtctttcgaatttcctccggtgtcttccctttgatcatgtccgccacatactggcaggtaagatccaatagactcttgatattcaagtcatttg 6774369  T
Q  196 cagcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatc 271  Q
    ||||  ||||||| ||||||||| ||| ||||| |||   |||||  |||||||| ||||||  ||||||||||||    
T  6774368 cagcaagaatgagatcgaaaagcgtagtctgatgaac---cttcacaaattcagcatcccaattcttaagatcatc 6774296  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 271
Target Start/End: Original strand, 37476241 - 37476335
Alignment:
Q  174 ctcttgatgttcaagtaatttgcagcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatc 271  Q
    |||||||| |||||||||||||||||  ||||||| ||||||||  || ||||||||||   ||| | ||||||||| ||||||  ||||||||||||    
T  37476241 ctcttgatattcaagtaatttgcagcaagaatgagatcgaaaagtttatcctgatcaac---ctttacgaattcagcatcccaattcttaagatcatc 37476335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 177 - 271
Target Start/End: Complemental strand, 55118972 - 55118878
Alignment:
Q  177 ttgatgttcaagtaatttgcagcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatc 271  Q
    ||||||||||||||| |||||||| ||| ||| |||  |||  || |||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  55118972 ttgatgttcaagtaaattgcagctagaaggagatcgttaagggtatcctgatcaacctgcttcatgaattcagcgtcccaagccttgagatcatc 55118878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 52791814 - 52791851
Alignment:
Q  115 cttgcgaatctcctccggcgtcttccccttgatcatgt 152  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  52791814 cttgcaaatctcctccggcgtcttacccttgatcatgt 52791851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 11160892 - 11160852
Alignment:
Q  113 gtcttgcgaatctcctccggcgtcttccccttgatcatgtc 153  Q
    ||||| |||||||||||||||||| | ||||||||||||||    
T  11160892 gtcttacgaatctcctccggcgtcctacccttgatcatgtc 11160852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 8992611 - 8992555
Alignment:
Q  105 tgttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacag 161  Q
    ||||||| ||||||||||||||||| || |||||||||||||||||||| |||||||    
T  8992611 tgttaaaggtcttgcgaatctcctcaggtgtcttccccttgatcatgtctgccacag 8992555  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 271
Target Start/End: Original strand, 45071637 - 45071811
Alignment:
Q  105 tgttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgcca--------caggtaag---caacaggctcttgatgttcaagtaatt 193  Q
    ||||||| ||||| ||||| |||||||| |||||||| ||||||||||||||||        ||||||||   || || || |||||| | |||||| ||    
T  45071637 tgttaaaagtctttcgaatttcctccggtgtcttccctttgatcatgtccgccacaatctggcaggtaagatccagcaagcccttgatatccaagtagtt 45071736  T
Q  194 tgcagcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatc 271  Q
    ||||||  ||||||| || |||||| |||||||||||||   ||||| ||||||||| ||||||  ||||||||||||    
T  45071737 tgcagcaagaatgaggtcaaaaagcgtagcctgatcaac---cttcacgaattcagcatcccaattcttaagatcatc 45071811  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 50915295 - 50915239
Alignment:
Q  105 tgttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacag 161  Q
    ||||||| || || ||||| |||||||| |||||||| || ||||||||||||||||    
T  50915295 tgttaaaagtgtttcgaatttcctccggtgtcttccctttcatcatgtccgccacag 50915239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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