View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12072_low_8 (Length: 336)
Name: NF12072_low_8
Description: NF12072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12072_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 7993334 - 7993661
Alignment:
| Q |
1 |
tcctctccatcaccagccgtctccgattctcatacactttccacgatgcatcgcggacttttctatgtcgcctattcaaaagattcactaaccttaactc |
100 |
Q |
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| T |
7993334 |
tcctctccatcaccagccgtctccgattctcatacactttctacgatgcatcgcggacttttctatgtcgcatattcgaaagattcactaaccttaactc |
7993433 |
T |
|
| Q |
101 |
cctcaacctctcgaactaccgttgtgaccttgacaaggttctccgggaaatctctactttcccatcattgaacatcacatcccttaatatctccgaccaa |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7993434 |
cctcaacctctcgaactaccattgtgaccttgacaagtttctgcgggaaatctctactttcccatcattgaacatcacatcccttaatatctccgaccaa |
7993533 |
T |
|
| Q |
201 |
ggcatctttcccggctatggtctgcgagcatttgcgcaaaacattaaaactttgacctctctcaattgttccaatacttttcttggtaagggcggcctgt |
300 |
Q |
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| T |
7993534 |
tgcaactttcccgcctatggtttgcgagcatttgcccaaaacattacaattttgacctctctcaattgttccaatacttttcttggtaagggcggcctgt |
7993633 |
T |
|
| Q |
301 |
tattcattgccaactgtttccctttgct |
328 |
Q |
| |
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| T |
7993634 |
tactcattgccaattgtttccctttgct |
7993661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 200
Target Start/End: Complemental strand, 6417298 - 6417164
Alignment:
| Q |
66 |
tgtcgcctattcaaaagattcactaaccttaactccctcaacctctcgaactaccgttgtgaccttgacaaggttctccgggaaatctctactttcccat |
165 |
Q |
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| T |
6417298 |
tgtcgcctctttaaaagattcacaaaccttaattccctcaacctcacacgctttcatggcgaccttgatgctcttctccgtaaaatctctcgttttccat |
6417199 |
T |
|
| Q |
166 |
cattgaacatcacatcccttaatatctccgaccaa |
200 |
Q |
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| T |
6417198 |
cattgaacatcacatcacttaatatctccaaccaa |
6417164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 8913442 - 8913478
Alignment:
| Q |
238 |
aaaacattaaaactttgacctctctcaattgttccaa |
274 |
Q |
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|||| |||| ||||||||||||||||||||||||||| |
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| T |
8913442 |
aaaagattacaactttgacctctctcaattgttccaa |
8913478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 200
Target Start/End: Complemental strand, 10615907 - 10615785
Alignment:
| Q |
78 |
aaaagattcactaaccttaactccctcaacctctcgaactaccgttgtgaccttgacaaggttctccgggaaatctctactttcccatcattgaacatca |
177 |
Q |
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||||||||||| |||||||| |||||||||||| | || || ||||||||||| ||||||| |||||||| |||||||||||||||||||| |
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| T |
10615907 |
aaaagattcacaaaccttaattccctcaacctcacacgcttccacggtgaccttgacgctcttctccgcaaaatctctcgtttcccatcattgaacatca |
10615808 |
T |
|
| Q |
178 |
catcccttaatatctccgaccaa |
200 |
Q |
| |
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|||| |||||||| ||| ||||| |
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| T |
10615807 |
catcacttaatatttccaaccaa |
10615785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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