View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12073_high_10 (Length: 439)
Name: NF12073_high_10
Description: NF12073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12073_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 184 - 315
Target Start/End: Complemental strand, 18601441 - 18601310
Alignment:
| Q |
184 |
aagaatgatacatgtgtttgttaaaatatatgactctttgccttgtcatttgcgattagctcnnnnnnngtcttgcgtatacactccatagctgcgggct |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||| ||| |
|
|
| T |
18601441 |
aagaatgatacatgtgtttgttaaaatatatgactctttgccttgtcatttgagattagctcaaaaaaattcttgcgtatacactccatagcggcgcgct |
18601342 |
T |
|
| Q |
284 |
gggtcaagaaggaaggaagaacagctacgttg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
18601341 |
gggtcaagaaggaaggaagaacagctacgttg |
18601310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 18601591 - 18601507
Alignment:
| Q |
31 |
attttggtgtaaactttagttgttttctttaccacatcttatgataaagaaacttctacttctggtgccaatataatttcatttctgc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
18601591 |
attttggtgtaaactttagttgttttctttagcacatcttatgatagagaaactt---cttctcgtgccaatataatttcatttctgc |
18601507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 374 - 420
Target Start/End: Complemental strand, 18601253 - 18601207
Alignment:
| Q |
374 |
ggacatgataatacttgttcgtataaaataaaataatatgcatagtg |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18601253 |
ggacatgataatacttgttcgtataaaataaaataatatgcatagtg |
18601207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 7306900 - 7306994
Alignment:
| Q |
20 |
attgtgtgagaattttggtgtaaactttagttgttttctttaccacatcttatgataaagaaacttctacttctggtgccaatataatttcattt |
114 |
Q |
| |
|
|||||||||| | |||| ||||||||||||||||||||||| |||||||| || || |||||||||||||| | || ||||||||||||||| |
|
|
| T |
7306900 |
attgtgtgaggactttgttgtaaactttagttgttttctttggcacatcttgtgttagagaaacttctacttttaatgttaatataatttcattt |
7306994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 27946034 - 27946108
Alignment:
| Q |
33 |
tttggtgtaaactttagttgttttctttaccacatcttatgataaagaaacttctacttctggtgccaatataat |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| || || |||| ||||||||||| ||| |||||||| |
|
|
| T |
27946034 |
tttgttgtaaactttagttgttttctttggcacatcttgtgctagagaagcttctacttcttgtgttaatataat |
27946108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University