View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12073_high_11 (Length: 436)
Name: NF12073_high_11
Description: NF12073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12073_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 266 - 414
Target Start/End: Complemental strand, 12483302 - 12483156
Alignment:
| Q |
266 |
caatttattgaatgaattgcataatgatattttacaatggatattaagcaacaaaggaagaatacacaacattggaaaagaagaataatatatgatgatg |
365 |
Q |
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| T |
12483302 |
caatttactgaatgaattgcaaaatgatattttacaatgtatattaagcaacaaaggaagaatacacaacattgaaaaagaagaata--atatgatgatg |
12483205 |
T |
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| Q |
366 |
atacacatagtatattctcagaattgaccaacaaagcaccagtggtcta |
414 |
Q |
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| T |
12483204 |
atacatatagtatattattagaattgaccaacaaagcaccagtggtcta |
12483156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 60 - 171
Target Start/End: Complemental strand, 12483497 - 12483388
Alignment:
| Q |
60 |
attgactctta-caaaataaaatatttgattgtaacaacatgtgttgacgttgcgtcgatatatgtaaaataccaaacacactttcattatgtcatacac |
158 |
Q |
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| T |
12483497 |
attgactcttaacaaaataaaatatttgattgtaaca---tgtgttgatgttgcgtcgatatatgtaaaacaccatacacaatttcaatatgtcaaacac |
12483401 |
T |
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| Q |
159 |
cataccacttttt |
171 |
Q |
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| T |
12483400 |
cataacacttttt |
12483388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 346 - 414
Target Start/End: Original strand, 12289340 - 12289409
Alignment:
| Q |
346 |
aagaataatatatgatgatgatacacatagtatattctcagaattgaccaacaa-agcaccagtggtcta |
414 |
Q |
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| T |
12289340 |
aagaataatatatgatgatgatacatatagtatattctcagaattgaccaacaagagcaccagtggtcta |
12289409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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